Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0877
         (570 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGQ2 Cluster: Cuticle protein 3; n=2; Bombycoidea|Rep...    58   1e-07

>UniRef50_Q5MGQ2 Cluster: Cuticle protein 3; n=2; Bombycoidea|Rep:
           Cuticle protein 3 - Lonomia obliqua (Moth)
          Length = 197

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +1

Query: 250 ALCVVAAVGVPVEDGKWHPYHYGDSGK 330
           ALCVVA VG+P+EDGKWHPY YGDSG+
Sbjct: 11  ALCVVAVVGIPLEDGKWHPYKYGDSGR 37



 Score = 44.4 bits (100), Expect = 0.002
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 517 RYIPTDEGKYIHIPNPYI 570
           RYIP+DEGKYIHIPNPYI
Sbjct: 37  RYIPSDEGKYIHIPNPYI 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,827,071
Number of Sequences: 1657284
Number of extensions: 6589706
Number of successful extensions: 13006
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13005
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)