Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0877
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   7.4  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   7.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.8  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 458 LCLTFFSYYIHV 423
           LCL F+SY+ ++
Sbjct: 80  LCLPFYSYFFYL 91


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 458 LCLTFFSYYIHV 423
           LCL F+SY+ ++
Sbjct: 36  LCLPFYSYFFYL 47


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 156 FEKKKTRKLKINLER 112
           FEK K  ++ INLE+
Sbjct: 479 FEKLKQARMTINLEK 493


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 328 CQNRRNGKDAIFHPQQVHPLRLRR 257
           CQN    KDA+ H +      LRR
Sbjct: 100 CQNVGMNKDAVQHERGPRNSTLRR 123


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 328 CQNRRNGKDAIFHPQQVHPLRLRR 257
           CQN    KDA+ H +      LRR
Sbjct: 100 CQNVGMNKDAVQHERGPRNSTLRR 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,527
Number of Sequences: 336
Number of extensions: 2006
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)