Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0876
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 33 0.14
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 33 0.14
At5g53440.1 68418.m06641 expressed protein 30 1.3
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 30 1.3
At2g11005.1 68415.m01177 glycine-rich protein 30 1.3
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 29 3.1
At1g65440.1 68414.m07424 glycine-rich protein 28 5.4
At4g30150.1 68417.m04287 expressed protein 27 7.2
At3g15400.1 68416.m01954 anther development protein, putative si... 27 9.5
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 27 9.5
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 27 9.5
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 27 9.5
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 170
S+G + G+S G GDS G R +S R+ +S G +G S G G R
Sbjct: 118 SSGANDRGGGGYSRGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQR 173
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 170
S+G + G+S G GDS G R +S R+ +S G +G S G G R
Sbjct: 118 SSGANDRGGGGYSRGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQR 173
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 6 TGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSD-SLERAGSVSNGD 146
T +S KG S +G WNG +GES + + S E++ GD
Sbjct: 69 TSSSSKRRKGKSGESGSDRWNGKDDDKGESSKKTKVSSEKSRKRDEGD 116
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSA----WNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 170
S G SCS + S G+ +S +GDS + + + DS ++ ++GDS + +
Sbjct: 1200 SDGDSCSKSQKKSDGDTNSKSQKKGDGDSSSKSHKKNDGDSSSKSHKKNDGDSSSKSHKK 1259
Query: 171 AD 176
+D
Sbjct: 1260 SD 1261
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/78 (21%), Positives = 32/78 (41%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADKF 182
S S G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1156 SNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSCSKSQKKSDGD 1215
Query: 183 SLGVKVSLGLGELANNSN 236
+ G G+ ++ S+
Sbjct: 1216 TNSKSQKKGDGDSSSKSH 1233
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 176
S S ++G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1108 SKSQSLKKNEGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1165
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 176
S S G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1120 SNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1177
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 176
S S G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1132 SNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1189
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 176
S S G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1144 SNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1201
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +3
Query: 9 GTSCSSDKGHSAGNGDSAW------NGDSIWRGESERNSDSLERAGSVSNGDS 149
G SS K H +GDS+ +GDS + + + DS ++ S GDS
Sbjct: 1224 GDGDSSSKSHKKNDGDSSSKSHKKNDGDSSSKSHKKSDGDSSSKSHKKSEGDS 1276
>At2g11005.1 68415.m01177 glycine-rich protein
Length = 170
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 9 GTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDS 167
G+ G +G+GD +GD G R+SD + +GDS G GD+
Sbjct: 17 GSGGGGGSGDGSGSGDGGGSGD----GGGSRDSDGSGDSSGGGSGDSGGFGDN 65
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 39 SAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADKFSLG 191
S G G GDS + G E S +G GDS GRG + S G
Sbjct: 625 SGGGGGRGGYGDSGYGGRGESGYGSRGDSGYGGRGDSGGRGSWAPSRDSSG 675
>At1g65440.1 68414.m07424 glycine-rich protein
Length = 1647
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 24 SDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNG 143
+D G S G+G + + W+G S+R+ R G NG
Sbjct: 1434 ADHGSSGGSGWGSSQSEGGWKGNSDRSGSG--RGGEYRNG 1471
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 598 TGTKSNNPNREETSXNKNQWKILM*RANAMVETEAITPEPTYDKENVVADIHTEE 434
TG+K +NP+++ KN + +VET+A D+E V DI EE
Sbjct: 44 TGSKKSNPSKKRKQTKKNSETQFEDSSVEVVETKAC------DQEETVTDIVVEE 92
>At3g15400.1 68416.m01954 anther development protein, putative
similar to anther development protein ATA20 GB:AAC50042
GI:2708813 from [Arabidopsis thaliana]
Length = 416
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = +3
Query: 30 KGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADKFSLGV 194
+G +G G G+ I G ++ N + A G+ +G+G + +G+
Sbjct: 270 EGIGSGGGTGIGIGEGIGSGSAQPNCGPVTGAPGSGFGEGIGQGSGPGEGIGIGI 324
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 457 VADIHTEEPQDIFPEISSKHTMPPEIRLYGQ 365
++ +H+EE +I P KH +PP +RL G+
Sbjct: 1048 LSQLHSEEVNNIIP----KHFLPPIVRLCGK 1074
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 457 VADIHTEEPQDIFPEISSKHTMPPEIRLYGQ 365
++ +H+EE +I P KH +PP +RL G+
Sbjct: 1048 LSQLHSEEVNNIIP----KHFLPPIVRLCGK 1074
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 594 EQNQITPTVKKHRETKISGRF*CSGLT--QWL 505
E+NQI P +R+T ++ SGLT QW+
Sbjct: 1073 ERNQILPQEDTYRQTNVASAISSSGLTTHQWV 1104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,312,691
Number of Sequences: 28952
Number of extensions: 241835
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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