Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0875
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)                      38   0.006
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)                    33   0.24 
SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)                     29   2.9  
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)                     29   5.1  
SB_12229| Best HMM Match : DUF433 (HMM E-Value=1.4)                    28   8.9  

>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
          Length = 472

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
 Frame = +1

Query: 22  ENYFWSDSHP-EGVGMEPRAIHPGMKFSITG-NGGLLGEASVFRADLPQVEEKTEYVDVP 195
           ENYFWSDS+P EG          G K+S+    G  LG   + +    QV +K  +  V 
Sbjct: 233 ENYFWSDSNPEEGYAFSISLSLGGHKYSVLDRQGKALGNVEILKNGEKQVVKKKRFNPV- 291

Query: 196 GTRGKAVEKYIHVDVTCHVKLATTGGGSVDSEVHLMKVSGVALVRKDPGQAAARLMKVFN 375
                +VE  +   V    KL     G    +V+L+   GVA+  K   Q  A + ++ +
Sbjct: 292 -----SVE--LETKVNLRTKLWLKDAGKEARDVNLL---GVAIATKYARQPCACVERIVD 341

Query: 376 V 378
           V
Sbjct: 342 V 342


>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
          Length = 646

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
 Frame = +1

Query: 22  ENYFWSDSHPE-GVGMEPRAIHPGMKFSI-TGNGGLLGEASVFRADLPQVEEKTEYVDVP 195
           +N+FWSDS+P+ G     + +  G  F +  G+   +GEA V    L   +     ++  
Sbjct: 40  DNFFWSDSNPDAGFAFSIQIVSQGETFRVFDGSSRYIGEAEV-TTILDNQQILGSKMEES 98

Query: 196 GTRGKAVEKYIHVDVTCHVKLATTGGGSVDSEVHLMKVSGVALVRKDPGQAAARLMKVFN 375
           G     + K + V+  C +K +      +      M+VSGVA   K      A ++++ +
Sbjct: 99  G-----LNKTVTVEFDCKLKYSC----DISLAPKTMRVSGVAEAHKSRDTHRASVVQITD 149

Query: 376 VGL 384
           + L
Sbjct: 150 IEL 152


>SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)
          Length = 311

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 127 GEASVFRADLPQVEEKTEYVDVPGTRGKAVEKY-IHV 234
           GE  +   DLP+++EK E + VP    K +EK  IHV
Sbjct: 196 GEFRIMVKDLPKIDEKGEIISVPNK--KQIEKLPIHV 230


>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
          Length = 1007

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 224 TFTWTLLAT*NWLQLAADLW 283
           T++W  +AT NW+ +A D W
Sbjct: 298 TYSWVSVATYNWVSVATDNW 317


>SB_12229| Best HMM Match : DUF433 (HMM E-Value=1.4)
          Length = 351

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 279 CGLRSSSDESIWRSTCAQGPRSGRCQAN-ESFQRGIGLSIELVVRPLS 419
           CG   +S   + RSTC       RCQ    S  R  GL +  +  PLS
Sbjct: 173 CGRLMASRRGVTRSTCNTNGTDTRCQHEVSSNTRRTGLPLNSIRLPLS 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,441,224
Number of Sequences: 59808
Number of extensions: 558792
Number of successful extensions: 1841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1840
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)