Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0875
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23660.2 68417.m03407 UbiA prenyltransferase family protein s... 32 0.34
At4g23660.1 68417.m03406 UbiA prenyltransferase family protein s... 32 0.34
At5g48910.1 68418.m06051 pentatricopeptide (PPR) repeat-containi... 31 0.59
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 31 0.78
At5g41040.2 68418.m04989 transferase family protein similar to h... 29 2.4
At5g41040.1 68418.m04988 transferase family protein similar to h... 29 2.4
At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family / ... 29 4.2
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf... 29 4.2
At2g25150.1 68415.m03008 transferase family protein similar to 1... 29 4.2
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi... 28 5.5
At5g38970.3 68418.m04714 cytochrome P450, putative similar to Cy... 28 5.5
At5g38970.2 68418.m04712 cytochrome P450, putative similar to Cy... 28 5.5
At5g38970.1 68418.m04713 cytochrome P450, putative similar to Cy... 28 5.5
At5g15340.1 68418.m01796 pentatricopeptide (PPR) repeat-containi... 28 7.3
At1g07060.1 68414.m00752 expressed protein 28 7.3
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi... 27 9.6
>At4g23660.2 68417.m03407 UbiA prenyltransferase family protein
similar to para-hydroxybenzoate--polyprenyltransferase,
mitochondrial [Precursor] [Saccharomyces cerevisiae],
SP|P32378; contains PF01040 UbiA prenyltransferase
family domain
Length = 407
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = +3
Query: 204 WEGGRKIHSRGRYLPRE----IGYNWRRICGLRSSS 299
W ++ S+GR L +E +G+N+R ICG+ SSS
Sbjct: 55 WNDNYQVWSKGRELHQEKFFGVGWNYRLICGMSSSS 90
>At4g23660.1 68417.m03406 UbiA prenyltransferase family protein
similar to para-hydroxybenzoate--polyprenyltransferase,
mitochondrial [Precursor] [Saccharomyces cerevisiae],
SP|P32378; contains PF01040 UbiA prenyltransferase
family domain
Length = 407
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = +3
Query: 204 WEGGRKIHSRGRYLPRE----IGYNWRRICGLRSSS 299
W ++ S+GR L +E +G+N+R ICG+ SSS
Sbjct: 55 WNDNYQVWSKGRELHQEKFFGVGWNYRLICGMSSSS 90
>At5g48910.1 68418.m06051 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 646
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 61 GMEPRAIHPGMKFSITGNGGLLGEASVFRADLP 159
G+EPR H G + G GLL EA F ++P
Sbjct: 406 GLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP 438
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 31.1 bits (67), Expect = 0.78
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -2
Query: 570 DRLAFDGAF-VAPGGCLSDTVTIAKRALSQVLLHHSSTEGDLRFWVESELSLRV 412
+R+ +G F + G L+DT +A + LS HSST+G +F E EL LRV
Sbjct: 568 ERVIGEGGFGIVYHGHLNDTEQVAVKLLS-----HSSTQGYKQFKAEVELLLRV 616
>At5g41040.2 68418.m04989 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 441
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 519 DTVTIAKRALSQVLLHHSSTEGDLRFWVESELSLRVGEQQV 397
+ V + K+ALSQVL+H+ G L E +L++ E+ V
Sbjct: 64 EAVQVIKKALSQVLVHYYPLAGRLTISPEGKLTVDCTEEGV 104
>At5g41040.1 68418.m04988 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 457
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 519 DTVTIAKRALSQVLLHHSSTEGDLRFWVESELSLRVGEQQV 397
+ V + K+ALSQVL+H+ G L E +L++ E+ V
Sbjct: 80 EAVQVIKKALSQVLVHYYPLAGRLTISPEGKLTVDCTEEGV 120
>At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family /
NAGLU family contains Pfam profile: PF05089
alpha-N-acetylglucosaminidase (NAGLU)
Length = 806
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -2
Query: 351 SGLTWVLAHKCYARYFHQMNFGVHRSAASCSQFHVASNVHVNVFFYRLPTGPWNVY 184
SGL W L +KC A G+ AS Q + F R P PWN Y
Sbjct: 107 SGLHWYLKYKCNAHVSWDKTGGI--QVASVPQPGHLPRIDSKRIFIRRPV-PWNYY 159
>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 417
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 290 SESTDPPPVVANFTWQVTST*MYFSTAFPRVPGTSTYSVFSST*GRSARKT 138
S S++P +++ V+S+ + S A PR+PGT V T R RKT
Sbjct: 233 SPSSNPSILISEEPKSVSSSQLISSPAKPRLPGTEDKIVLYFTTLRGIRKT 283
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 546 FVAPGGCLSDTVTIAKRALSQVLLHHSSTEGDL 448
F A G L D V++ ++ALS++L+H+ G L
Sbjct: 53 FKANGKNLDDPVSLLRKALSELLVHYYPLSGKL 85
>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 701
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 61 GMEPRAIHPGMKFSITGNGGLLGEASVF 144
G++PRA+H + G GLL EA F
Sbjct: 457 GIKPRAMHYACMIELLGRDGLLDEAIAF 484
>At5g38970.3 68418.m04714 cytochrome P450, putative similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum};
Length = 419
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 205 HGSLERLHILSFPRLEVGQLGKHWLHPKDPHFL*Y*ISFLDEWRVVPCLHLQDASR 38
HGS RL S L + + + PK HF+ S+LD+W + + +QD ++
Sbjct: 119 HGSSHRLMRGSLLSLISSTMMRDHILPKVDHFM---RSYLDQWNELEVIDIQDKTK 171
>At5g38970.2 68418.m04712 cytochrome P450, putative similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum};
Length = 384
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 205 HGSLERLHILSFPRLEVGQLGKHWLHPKDPHFL*Y*ISFLDEWRVVPCLHLQDASR 38
HGS RL S L + + + PK HF+ S+LD+W + + +QD ++
Sbjct: 38 HGSSHRLMRGSLLSLISSTMMRDHILPKVDHFM---RSYLDQWNELEVIDIQDKTK 90
>At5g38970.1 68418.m04713 cytochrome P450, putative similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum};
Length = 465
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 205 HGSLERLHILSFPRLEVGQLGKHWLHPKDPHFL*Y*ISFLDEWRVVPCLHLQDASR 38
HGS RL S L + + + PK HF+ S+LD+W + + +QD ++
Sbjct: 119 HGSSHRLMRGSLLSLISSTMMRDHILPKVDHFM---RSYLDQWNELEVIDIQDKTK 171
>At5g15340.1 68418.m01796 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 623
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 61 GMEPRAIHPGMKFSITGNGGLLGEASVFRADLP 159
G+EP+ H + G GL+ EA + ++P
Sbjct: 381 GLEPKVDHYACMVDLLGRAGLIEEAEILMREMP 413
>At1g07060.1 68414.m00752 expressed protein
Length = 233
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 416 LRLSSLSTQNLKSPSVLEW*SSTCDSARFAIVTVSLKHPPGATKAPSNA 562
+R +L+ + LKSPS L S + +FA+ ++ P A KA NA
Sbjct: 121 MRYEALNLRQLKSPSCLWLGVSHSEWTKFAVQSMENGFPSIAGKASENA 169
>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 978
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 61 GMEPRAIHPGMKFSITGNGGLLGEASVFRADLP 159
G+ P +H G + G GLL EA D+P
Sbjct: 602 GVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMP 634
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,316
Number of Sequences: 28952
Number of extensions: 378284
Number of successful extensions: 892
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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