Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0872
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic...    29   3.5  
At5g44490.1 68418.m05451 F-box family protein contains F-box dom...    28   6.2  

>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
           to heat shock protein 101 GI:6715468 GB:AAF26423 from
           [Arabidopsis thaliana]
          Length = 911

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 54  VQDQRIQIRLSVHC-PNERDRISGARSAELRVHIRDLRE 167
           ++ +R+Q+ + +H    E+D+ S AR  E+R  + DLR+
Sbjct: 416 LERKRMQLEIELHALEREKDKASKARLIEVRKELDDLRD 454


>At5g44490.1 68418.m05451 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +3

Query: 261 RARLQLHRNHLREILIYLLTYTEERSFYSGFLLNLFVEIRQIRDMFV 401
           R+++  + + L +I I  L Y E R+F++    N F+ I ++RDM +
Sbjct: 237 RSKIVSNMDSLAKIEIVGLFYIE-RAFHNKVARNFFIGISRVRDMII 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,493
Number of Sequences: 28952
Number of extensions: 262250
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)