Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0871
         (400 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q170P5 Cluster: Crumbs; n=2; Culicidae|Rep: Crumbs - Ae...    39   0.041
UniRef50_A0A1F4 Cluster: Eyes shut; n=7; Sophophora|Rep: Eyes sh...    37   0.13 
UniRef50_A5ZM56 Cluster: Putative uncharacterized protein; n=1; ...    35   0.67 
UniRef50_Q057F5 Cluster: Exodeoxyribonuclease V, b chain; n=1; B...    32   3.6  

>UniRef50_Q170P5 Cluster: Crumbs; n=2; Culicidae|Rep: Crumbs - Aedes
            aegypti (Yellowfever mosquito)
          Length = 1780

 Score = 38.7 bits (86), Expect = 0.041
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -1

Query: 313  LSVDARLNATGNAPASHDKMTLLPYLYIG 227
            LS+D ++N +GN+P S  K+ + PYL+IG
Sbjct: 1090 LSIDGKVNISGNSPGSSSKLNVSPYLFIG 1118


>UniRef50_A0A1F4 Cluster: Eyes shut; n=7; Sophophora|Rep: Eyes shut -
            Drosophila melanogaster (Fruit fly)
          Length = 2176

 Score = 37.1 bits (82), Expect = 0.13
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 313  LSVDARLNATGNAPASHDKMTLLPYLYIG 227
            LSVD + N TG +P S  +M +LP LY+G
Sbjct: 1464 LSVDGKFNITGRSPGSGSRMDVLPILYLG 1492


>UniRef50_A5ZM56 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 318

 Score = 34.7 bits (76), Expect = 0.67
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +1

Query: 10  YNLHFSQYCSRDCLKLIEIFFLVVMLLVGNIFEHLIGTVDL 132
           ++ +FS +CSR  +KL+E  F + + ++ +I  H+I T D+
Sbjct: 212 HSRNFSIFCSRSLIKLLETSFCICLYIIISIVIHIILTCDI 252


>UniRef50_Q057F5 Cluster: Exodeoxyribonuclease V, b chain; n=1;
           Buchnera aphidicola str. Cc (Cinara cedri)|Rep:
           Exodeoxyribonuclease V, b chain - Buchnera aphidicola
           subsp. Cinara cedri
          Length = 1167

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -1

Query: 277 APASHDKMTLLPYLYIGTLLQITCKKSYT*KYKFE--LTFTLSRTLKNSHTDQLYRSGAQ 104
           A A   K   +   Y+  +L I  KKSY+     +  L  T + T KN   ++LY+   Q
Sbjct: 21  ASAGTGKTFSIIIFYLRLILNIGIKKSYSSPIPIKKILIVTFTETAKNELKERLYKKICQ 80

Query: 103 RYYLRV 86
            YY+ +
Sbjct: 81  LYYMSI 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,815,147
Number of Sequences: 1657284
Number of extensions: 3672947
Number of successful extensions: 9468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9468
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)