Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0871
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.60 
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   27   4.3  
SB_10750| Best HMM Match : CARD (HMM E-Value=0.015)                    27   7.4  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  

>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = -1

Query: 262 DKMTLLPYLYIGTLLQITCKKSYT*KYKFELTFTLSRTLKNSHTDQLYRSGAQRYYLRVT 83
           D  TLL Y Y G ++    KK     Y FE+   L +    SH  Q +       Y  V 
Sbjct: 609 DAKTLLCYYYYGGMIYTALKKFERALYFFEVIINLPKF--TSHVVQRFLKPLSAAYHEVA 666

Query: 82  SRLGKISQSALDSLV 38
           +     +QS L ++V
Sbjct: 667 NSYSSNNQSELQAVV 681


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 187 KYKFELTFTLSRTLKNSHTDQLYRSG 110
           KY++EL  TL  T+  ++TD + R G
Sbjct: 518 KYRYELQVTLDGTVGRAYTDVIARQG 543


>SB_10750| Best HMM Match : CARD (HMM E-Value=0.015)
          Length = 275

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = -3

Query: 227 YVTTDYMQKKLHLKIQI*VNFYAIENVKKLAHRSTVPIRCSKILPTSNITTRKNISISFR 48
           ++ TD  QK +  K  + +N     N +   +  T+P+R  ++L  ++I    N+S SF 
Sbjct: 154 HIETDEKQKIVK-KFNLYINKNVHPNTE--VYNCTMPLRDRQLLQQNHIFILDNVSDSFE 210

Query: 47  QSREQY 30
            SR+ +
Sbjct: 211 LSRKLF 216


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 134 HRSTVPIRCSKILPTSNITTRKNISI 57
           HRS VP   S +LP+S ITT+ +++I
Sbjct: 328 HRSPVP--SSHLLPSSTITTQPSLTI 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,716,302
Number of Sequences: 59808
Number of extensions: 114387
Number of successful extensions: 256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)