Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0871
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z73906-7|CAA98119.2|  428|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    26   8.7  

>U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical
           protein C17H11.2 protein.
          Length = 738

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 155 ENVKKLAHRSTVPIRCSKILPTSNITTRKNISISFRQ 45
           E V+K+A      ++ +K LP +NIT R   S +FR+
Sbjct: 433 EYVQKIAEAQVAAVK-NKSLPVTNITPRPKKSFNFRK 468


>Z73906-7|CAA98119.2|  428|Caenorhabditis elegans Hypothetical
           protein D2030.7 protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 218 TDYMQKKLHLKIQI*VNFYAIENVKKLAHRSTVPIRCSKILPTSNITT 75
           TD M +K+H+ IQ       ++ V +++      + C  + PTS I T
Sbjct: 133 TDIMAEKMHIGIQT----EEVKFVSEISALGITEVECQNVFPTSFIKT 176


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 257 DDSAAVSLYRYVTTDYMQKKLHLKIQ 180
           DDS++  L RY+  DY Q+K   K++
Sbjct: 309 DDSSSDPLARYLNRDYWQQKKEGKVE 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,863,282
Number of Sequences: 27780
Number of extensions: 96003
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)