Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0870
(610 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 319 4e-86
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 317 2e-85
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 192 2e-78
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 285 4e-76
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 246 2e-64
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 151 7e-62
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 237 1e-61
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 232 6e-60
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 228 7e-59
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 202 4e-51
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 202 5e-51
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 153 3e-36
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 116 6e-25
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 110 3e-23
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 108 1e-22
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 108 1e-22
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 107 2e-22
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 105 1e-21
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 103 4e-21
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 102 6e-21
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 99 4e-20
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 100 5e-20
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 99 7e-20
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 95 1e-18
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 94 2e-18
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 93 4e-18
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 93 4e-18
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 89 8e-17
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 87 2e-16
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 85 9e-16
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 74 3e-12
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 71 2e-11
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 70 5e-11
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 47 4e-04
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.035
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.25
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 5.3
UniRef50_Q5AN79 Cluster: Putative uncharacterized protein; n=2; ... 33 7.0
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 7.0
UniRef50_Q129Q7 Cluster: Aldo/keto reductase precursor; n=8; Pro... 32 9.3
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 9.3
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 32 9.3
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 32 9.3
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 32 9.3
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 319 bits (783), Expect = 4e-86
Identities = 149/189 (78%), Positives = 166/189 (87%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L APK MLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+K
Sbjct: 12 LAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVK 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 72 VDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQL 131
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGR 191
Query: 542 VGTIRVPRE 568
VGT+ V RE
Sbjct: 192 VGTV-VNRE 199
Score = 33.5 bits (73), Expect = 4.0
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 555 VXRERHAGXFDIVHIKD 605
V RERH G FDIVHIKD
Sbjct: 196 VNRERHPGSFDIVHIKD 212
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 317 bits (778), Expect = 2e-85
Identities = 142/182 (78%), Positives = 161/182 (88%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+D
Sbjct: 14 APKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKID 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
GKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G
Sbjct: 74 GKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGT 133
Query: 368 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 547
K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+G
Sbjct: 134 KGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIG 193
Query: 548 TI 553
I
Sbjct: 194 VI 195
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 192 bits (469), Expect(2) = 2e-78
Identities = 89/107 (83%), Positives = 96/107 (89%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+D
Sbjct: 14 APKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKID 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 328
GKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 74 GKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 123 bits (296), Expect(2) = 2e-78
Identities = 50/76 (65%), Positives = 65/76 (85%)
Frame = +2
Query: 326 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 505
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 506 LCMITGGRNLGRVGTI 553
+CM+TGG NLGR+G I
Sbjct: 212 MCMVTGGANLGRIGVI 227
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 285 bits (700), Expect = 4e-76
Identities = 130/185 (70%), Positives = 154/185 (83%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAPKH MLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+
Sbjct: 12 LNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQ 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ +
Sbjct: 72 VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQF 131
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN GR
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGR 191
Query: 542 VGTIR 556
VG I+
Sbjct: 192 VGVIK 196
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 246 bits (603), Expect = 2e-64
Identities = 111/189 (58%), Positives = 143/189 (75%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAP H ML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R IK
Sbjct: 12 LNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIK 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++
Sbjct: 72 IDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVL 131
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG +GR
Sbjct: 132 GTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGR 191
Query: 542 VGTIRVPRE 568
VG I V RE
Sbjct: 192 VGVI-VKRE 199
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 151 bits (366), Expect(2) = 7e-62
Identities = 64/92 (69%), Positives = 78/92 (84%)
Frame = +2
Query: 278 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 457
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 458 IATTKIMDFIKFESGNLCMITGGRNLGRVGTI 553
+ T KI DF KF++GNLCM+TGG NLGR+G I
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVI 167
Score = 109 bits (261), Expect(2) = 7e-62
Identities = 50/62 (80%), Positives = 54/62 (87%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APKH MLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q IK+D
Sbjct: 14 APKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMD 73
Query: 188 GK 193
GK
Sbjct: 74 GK 75
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 237 bits (581), Expect = 1e-61
Identities = 114/182 (62%), Positives = 139/182 (76%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
A +H MLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q IKVD
Sbjct: 25 ALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFIKVD 83
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
GK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++
Sbjct: 84 GKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRA 143
Query: 368 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 547
K +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++GNLC++TGG N GR+G
Sbjct: 144 KGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIG 202
Query: 548 TI 553
I
Sbjct: 203 VI 204
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 232 bits (567), Expect = 6e-60
Identities = 104/185 (56%), Positives = 139/185 (75%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L AP H +L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL+K
Sbjct: 26 LTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVK 85
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V +
Sbjct: 86 VDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKI 145
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
G K +P++VTHDGRTI Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G N+GR
Sbjct: 146 GAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGR 205
Query: 542 VGTIR 556
VGTI+
Sbjct: 206 VGTIQ 210
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 228 bits (558), Expect = 7e-59
Identities = 103/182 (56%), Positives = 138/182 (75%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAPK +L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+ I
Sbjct: 12 LNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIY 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+
Sbjct: 72 VDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSI 131
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
G K +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+LC++ G N+GR
Sbjct: 132 GSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGR 191
Query: 542 VG 547
+G
Sbjct: 192 IG 193
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 202 bits (494), Expect = 4e-51
Identities = 98/184 (53%), Positives = 120/184 (65%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L APK ML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q L+
Sbjct: 9 LYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVH 68
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T
Sbjct: 69 VDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYT 128
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
VP VTHDG IRYPDP + D+I ++ K +D IK G ++TGG N GR
Sbjct: 129 ATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGR 188
Query: 542 VGTI 553
+G I
Sbjct: 189 IGEI 192
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 202 bits (493), Expect = 5e-51
Identities = 94/171 (54%), Positives = 121/171 (70%), Gaps = 2/171 (1%)
Frame = +2
Query: 50 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 223
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 224 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 403
MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 404 TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIR 556
TIR+P+P IK+ D+++ D+ KI +F ESGN+C I G N+GRVG I+
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQ 308
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 153 bits (371), Expect = 3e-36
Identities = 76/182 (41%), Positives = 117/182 (64%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APK MLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++ IKV+
Sbjct: 14 APKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVN 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 74 GRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN- 132
Query: 368 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 547
+ +PY+V+ G +IR+ DP I + +I++ T+K++++I + ++ G+ GRVG
Sbjct: 133 QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVG 192
Query: 548 TI 553
I
Sbjct: 193 VI 194
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 116 bits (278), Expect = 6e-25
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L AP+ + + +A +P GPH + LPL++ +RN L YA T E K++ + +
Sbjct: 13 LAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFR 72
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVA 358
VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++
Sbjct: 73 VDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKT 131
Query: 359 TGPKNVPYLVTHDGRTI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFESGNLCM 514
T L HDGR I R DP + + D++ + + +I IKF G + +
Sbjct: 132 TVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAI 191
Query: 515 ITGGRNLGRVGTIR 556
I GGRN+GRVG ++
Sbjct: 192 IVGGRNVGRVGVVK 205
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 110 bits (264), Expect = 3e-23
Identities = 58/182 (31%), Positives = 95/182 (52%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APK + + +PS G H + L L + +R+ LK A E +I+ + VD
Sbjct: 15 APKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVD 74
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
G+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 75 GRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIK 132
Query: 368 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 547
+ HDG+ + + V D I L + +I + + + G +ITGG++ G +G
Sbjct: 133 GGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELG 192
Query: 548 TI 553
T+
Sbjct: 193 TV 194
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 108 bits (259), Expect = 1e-22
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 8/201 (3%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP + + V+ +PS GPH L +P+ I LR+ YA T E +I+ R+I+VD
Sbjct: 17 APPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVD 76
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
G+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R T
Sbjct: 77 GRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVK 136
Query: 368 KNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIATTKIMDFIKFESGNLCMITG 523
HDGR + Y + K D++ + I I+ + FE G L ++
Sbjct: 137 NGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVGTLAIVVD 196
Query: 524 GRNLGRVGTIRVPRETCRLLR 586
GRN+G +G I ++ + R
Sbjct: 197 GRNVGFMGRINAIQQVFKRSR 217
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 108 bits (259), Expect = 1e-22
Identities = 65/177 (36%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
Frame = +2
Query: 32 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 211
K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ + +KVDG VR D
Sbjct: 18 KKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYK 77
Query: 212 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 391
+P G MDV+ I T E++R++ D + + I+ EEA KL +V+ L
Sbjct: 78 FPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHF 137
Query: 392 HDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 553
HDGR T IK DS+ D+ I I + G ++ G N+G GT+
Sbjct: 138 HDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 107 bits (258), Expect = 2e-22
Identities = 64/188 (34%), Positives = 98/188 (52%), Gaps = 14/188 (7%)
Frame = +2
Query: 32 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 211
K GG +APRP GPH + +PL+I +R+ L YA E KI+ + I VDG VR +P
Sbjct: 26 KEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPK 85
Query: 212 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 391
+P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 86 FPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITM 145
Query: 392 HDGRT--IRYPDP------LIKVNDSIQLDI------ATTKIMDFIKFESGNLCMITGGR 529
HDG+ + DP + V DS+ L++ + K++D I FE G GR
Sbjct: 146 HDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGR 205
Query: 530 NLGRVGTI 553
+ G VG +
Sbjct: 206 HSGEVGRV 213
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 105 bits (251), Expect = 1e-21
Identities = 58/169 (34%), Positives = 87/169 (51%)
Frame = +2
Query: 47 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 226
+ P P+ G H + + L+ +R+ LK + E +I+ L+KVDGK + + GF
Sbjct: 23 WGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGF 82
Query: 227 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 406
MDV+ I E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 83 MDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
Query: 407 IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 553
D KV D + + KI + IK + GN IT G ++ + GTI
Sbjct: 141 FITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTI 189
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 103 bits (246), Expect = 4e-21
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 10/194 (5%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L AP + L + + RPS GPH + + LPL++ +R+ LKYA E KI++ I
Sbjct: 13 LAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKIL 72
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRV 355
+DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V
Sbjct: 73 IDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTV 130
Query: 356 ATGPKNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLC 511
G N+ L HDGR + + + K DS+ + I I + F G L
Sbjct: 131 VKG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLA 188
Query: 512 MITGGRNLGRVGTI 553
ITGG+++G I
Sbjct: 189 YITGGKHVGEFAKI 202
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 102 bits (245), Expect = 6e-21
Identities = 54/186 (29%), Positives = 95/186 (51%)
Frame = +2
Query: 41 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 220
G++ + S+GPH + + L+ ++ A E K+VK + V+GK +P
Sbjct: 25 GIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPI 84
Query: 221 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 400
MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D
Sbjct: 85 SLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDL 144
Query: 401 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIRVPRETCRL 580
R ++ IKV DS+ + +I+ +KFE G+LC+IT G++LG + I+ R+T +
Sbjct: 145 RELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKT-KS 203
Query: 581 LRHCAH 598
LR H
Sbjct: 204 LRKMIH 209
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 99 bits (238), Expect = 4e-20
Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 1/167 (0%)
Frame = +2
Query: 59 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 238
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 239 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRY 415
SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 88 SIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVT 146
Query: 416 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIR 556
I +D + + I +I + +K G+ ITGG ++G + TI+
Sbjct: 147 DRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATIK 193
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 99.5 bits (237), Expect = 5e-20
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 3/185 (1%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
+P+ +++ G ++ +PS GPH +PL + LR+ YA T E I+ + +KVD
Sbjct: 9 SPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVD 68
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
GKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 69 GKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVK 128
Query: 368 KNVPYLVTHDGRTI---RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 538
L HDGR I + + S+ +++ K+MD+ + + G N+G
Sbjct: 129 AGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVG 188
Query: 539 RVGTI 553
R GT+
Sbjct: 189 RHGTL 193
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 99.1 bits (236), Expect = 7e-20
Identities = 58/189 (30%), Positives = 91/189 (48%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L+ PK + + G + GPH LPL + +R+ LK E +I+ + +
Sbjct: 7 LSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVL 66
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T
Sbjct: 67 VDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTT 125
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
L +DG I + DS+ L I ++ +KFE GNL M+ GG++ G
Sbjct: 126 VKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGE 184
Query: 542 VGTIRVPRE 568
G I RE
Sbjct: 185 TGKIMEIRE 193
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 95.1 bits (226), Expect = 1e-18
Identities = 55/183 (30%), Positives = 90/183 (49%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP+ + + + +P G H +PLV+ LR+ LK A +E+ KI+ + + VD
Sbjct: 11 APRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVD 70
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
GKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 71 GKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALR 128
Query: 368 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 547
L HDG T+ + K DS+ L + KI + G+L M+T G++ G +G
Sbjct: 129 GGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIG 187
Query: 548 TIR 556
++
Sbjct: 188 KVK 190
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 94.3 bits (224), Expect = 2e-18
Identities = 53/185 (28%), Positives = 91/185 (49%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
++ PK + K + GPH + +PL + LR+ L E +++ + +
Sbjct: 8 ISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVL 67
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDG R D +P G MD+++I N +R++ D K R ++++ A KLC+++ +
Sbjct: 68 VDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTS 126
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
+ + +DG I DSI L + K++ IK+E GNL MI GG + G
Sbjct: 127 IKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGE 185
Query: 542 VGTIR 556
VG+I+
Sbjct: 186 VGSIK 190
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 93.5 bits (222), Expect = 4e-18
Identities = 61/171 (35%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Frame = +2
Query: 56 RPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 235
R GPHK++E +PL I L+ LK T E +I+ + VDGKVR D YP G MDV
Sbjct: 25 RSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDV 84
Query: 236 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 415
V I + R+I D T I+ E+AKYK ++ T V L DGR I
Sbjct: 85 VEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILL 144
Query: 416 P-DPLIKVN----DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 553
+ L + N ++++++ KI + G MI GGRN G G I
Sbjct: 145 KGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKI 195
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 93.5 bits (222), Expect = 4e-18
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Frame = +2
Query: 32 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 211
K G + +PS GPH +P+ ++LR+ L A EV ++ + VDG+ D
Sbjct: 23 KSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYK 82
Query: 212 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLV 388
+P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+ + Y +
Sbjct: 83 FPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTL 142
Query: 389 THDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIR 556
T DGRT D K + + +I KI + I E I G++ GR+G I+
Sbjct: 143 T-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIK 196
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 89.0 bits (211), Expect = 8e-17
Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L AP + K + + + GPH LP+ ++LR + A +EV KI+ QR +
Sbjct: 8 LVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQRDVL 66
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK++ T
Sbjct: 67 VNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATT-----KIMDFIKFESGNLCMITGG 526
L G + D K DS+ + + T +I+D + GN+ MI GG
Sbjct: 127 VKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGG 185
Query: 527 RNLGRVGTI 553
++ G+VG I
Sbjct: 186 KHSGKVGRI 194
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 87.4 bits (207), Expect = 2e-16
Identities = 58/183 (31%), Positives = 88/183 (48%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L+ VD
Sbjct: 10 APRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVD 69
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
GKV + GFMD +++ + L + YD KG+ I E KL +VK
Sbjct: 70 GKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGKTYVK 127
Query: 368 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 547
+ HDG T+ IK DS+ + I +I+D +KF GN ITGG ++G +
Sbjct: 128 GGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIA 187
Query: 548 TIR 556
TI+
Sbjct: 188 TIK 190
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 85.4 bits (202), Expect = 9e-16
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L P+ L + ++ +P+ G H C+PL + LR+ L A E +++ R +
Sbjct: 9 LTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQVL 68
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T
Sbjct: 69 VDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVMGKST 126
Query: 362 GPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 538
+ HDGR I D L D++ + + + F G +TGG ++G
Sbjct: 127 ITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGSHIG 186
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 73.7 bits (173), Expect = 3e-12
Identities = 48/182 (26%), Positives = 78/182 (42%)
Frame = +2
Query: 8 APKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP + + G + G H +P + LR+ L T E K + ++VD
Sbjct: 15 APSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNVEVD 74
Query: 188 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
G RT + G MDVV + T +++R++ +I E K+C+V +
Sbjct: 75 GVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSKTSIS 134
Query: 368 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 547
+ HDGR++ D + V DS + + KI+ + E G ++T G N G G
Sbjct: 135 GGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKGAHAVVTRGTNAGSTG 193
Query: 548 TI 553
TI
Sbjct: 194 TI 195
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 71.3 bits (167), Expect = 2e-11
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 3/187 (1%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
+ AP + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R +
Sbjct: 7 MTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQVL 65
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 66 LNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGGRN 532
+ G + K DS+ + IA + + GN+ +I GG++
Sbjct: 126 IKGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGGQH 184
Query: 533 LGRVGTI 553
+ G +
Sbjct: 185 TMKTGKL 191
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 69.7 bits (163), Expect = 5e-11
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 1/185 (0%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L+ P +++ + + GPH +PL+I LR+ L YA E + + +
Sbjct: 8 LSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVL 66
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 67 INGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTH 126
Query: 362 GPKNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 538
L HDG T I D DSI + +++ ++E G L G + G
Sbjct: 127 VSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAG 186
Query: 539 RVGTI 553
VG +
Sbjct: 187 EVGEV 191
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 46.8 bits (106), Expect = 4e-04
Identities = 30/101 (29%), Positives = 52/101 (51%)
Frame = -1
Query: 532 VTASRDHTQVPRLKLDEVHNLRSCNV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRH 353
V + DH Q ++LD + +L +V +G+ D + V +GAA+++ R+ L
Sbjct: 93 VVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELL 152
Query: 352 TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN*DNI 230
QLVL D V ES+L ++D + FI+L + D++
Sbjct: 153 APHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.035
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +2
Query: 62 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 241
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 242 IEKTNELFRLIYDVKG 289
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.25
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -1
Query: 262 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 83
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 82 QLV 74
Q +
Sbjct: 110 QFI 112
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 34.7 bits (76), Expect = 1.7
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = -2
Query: 528 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 349
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 348 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 220
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 5.3
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 383 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 517
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_Q5AN79 Cluster: Putative uncharacterized protein; n=2;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 830
Score = 32.7 bits (71), Expect = 7.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 555 RMVPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISG 421
R + RPK RP V +H F + S + + + N++ ++ + SG
Sbjct: 536 RKILKRPKTRPEVAMHNFCKATAKSSALIIQLVENYINTIRITSG 580
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 7.0
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 23 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 184
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_Q129Q7 Cluster: Aldo/keto reductase precursor; n=8;
Proteobacteria|Rep: Aldo/keto reductase precursor -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 317
Score = 32.3 bits (70), Expect = 9.3
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = -1
Query: 556 TNGAHTPQVTASRDHTQVPRLKLDEVHNLRSCNV*LDGIVDFD-----KWVWVADGAAIM 392
T+ A Q+ SR H ++PR L +VHNL + L + ++V +
Sbjct: 130 TSSAGAAQIEMSRRHWRLPRFDLLQVHNLVAWQEQLPLLQAMKTAGKLRYVGITTSEGRR 189
Query: 391 RYQVRNILRSGRHTLDFTQLVLSLL 317
++ I+R H +DF QL +LL
Sbjct: 190 HREIEQIMRG--HRIDFVQLSYNLL 212
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 32.3 bits (70), Expect = 9.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 451 LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 314
L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 32.3 bits (70), Expect = 9.3
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -1
Query: 460 NV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALN 281
NV + I + +WV G RY+ R R+ H + + +LL D VDCE+ LN
Sbjct: 400 NVTRETINNAAEWVRTT-GEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLN 458
Query: 280 I 278
I
Sbjct: 459 I 459
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 32.3 bits (70), Expect = 9.3
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 59 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 235
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 236 VSIEKTNELFRLIYDVKGRFTI 301
+ E+ +E + IYD+ R T+
Sbjct: 375 IPKEELSEKEKEIYDLIARRTL 396
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 32.3 bits (70), Expect = 9.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 209 TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 355
+YPA + D I + E+FRL+ + + RI + K C ++RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,950,659
Number of Sequences: 1657284
Number of extensions: 13528692
Number of successful extensions: 38243
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 36890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38218
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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