Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0870
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             309   1e-84
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   1.3  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   3.9  
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)                29   3.9  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  309 bits (758), Expect = 1e-84
 Identities = 139/184 (75%), Positives = 161/184 (87%)
 Frame = +2

Query: 2   LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
           LNAPKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQRLIK
Sbjct: 436 LNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIK 495

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
           +DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  
Sbjct: 496 IDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDV 555

Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
           G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN+GR
Sbjct: 556 GAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGR 615

Query: 542 VGTI 553
           VG +
Sbjct: 616 VGMV 619



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 561 RERHAGXFDIVHIKD 605
           RE+HAG FDIVH+KD
Sbjct: 622 REKHAGSFDIVHVKD 636


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +2

Query: 299 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 478
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 479 DFIKFESGNLCM 514
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +2

Query: 125 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 292
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 112 EES--SEVCFDRKRSPENCE 165
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
          Length = 560

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +2

Query: 11  PKHGMLDKLGGVYAPRPSTGPHKLRECLP-LVIFLRNRLKYALTGNEVLKIVKQRLI--K 181
           PKHG+  + G V+         K  E  P  ++F++ R+K  L G  + ++V++     +
Sbjct: 138 PKHGLFARPGVVHPHSDVDMISKTSEISPNAIVFIQTRMKRMLAGMRLRRLVERSGFERE 197

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 307
           +D  V+  P      ++ +S +   E F    D +  F I+R
Sbjct: 198 IDKHVQNTPASATASINQLS-DYLTECFST--DREKAFAIYR 236


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = +2

Query: 317  EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 487
            E+A   +C++ R+   P+    LV   G   +++      I   +  Q+ +     +  +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030

Query: 488  KFESGNLCMITGGRNLGRVGTI---RVPRETCRLL 583
            K +  NLC   G +N+G V  +   +VP E   +L
Sbjct: 3031 KLDLANLCTKAGLKNIGTVFLLTDAQVPEENFLVL 3065


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 189 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 73
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,892,516
Number of Sequences: 59808
Number of extensions: 446929
Number of successful extensions: 1143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)