Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0868
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.9  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   7.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   7.9  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 240 LSVQELHEHQWRHQRVQLPGTSQALLPD 157
           +S +  H+HQ     VQ+P    A+ PD
Sbjct: 19  VSAEHPHQHQHYGAAVQVPQGGGAVQPD 46


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 528 CTSFQCDQWRITCW 569
           C + +C+  + TCW
Sbjct: 873 CVTCKCENGKPTCW 886


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 493 LIWLEIMILVLPVPAFNVIN 552
           L+W+ ++ +VL   A+ V+N
Sbjct: 243 LVWISLIFVVLIGDAYAVLN 262


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 493 LIWLEIMILVLPVPAFNVIN 552
           L+W+ ++ +VL   A+ V+N
Sbjct: 243 LVWISLIFVVLIGDAYAVLN 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,041
Number of Sequences: 336
Number of extensions: 2415
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)