Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0868
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)              100   8e-22
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   40   0.001
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         31   0.71 
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 29   3.8  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   3.8  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            28   5.0  
SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)                     28   6.6  
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score =  100 bits (240), Expect = 8e-22
 Identities = 46/75 (61%), Positives = 58/75 (77%)
 Frame = +3

Query: 174 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 353
           G FRAAVPSGASTG++EALELRD   S++ GKGV  A+ N+N +I P L   N++VT Q 
Sbjct: 40  GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99

Query: 354 EIDELMLKLDGTENK 398
           +ID +ML+LDGTENK
Sbjct: 100 DIDNMMLQLDGTENK 114


>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +1

Query: 517 LVLPVPAFNVINGGSHAG 570
           ++LPVPAFNVINGGSHAG
Sbjct: 41  VILPVPAFNVINGGSHAG 58



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 471 VPLYKHLADLAGNNDI 518
           VPLYK++A LAGNN +
Sbjct: 26  VPLYKYIAGLAGNNQV 41


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -2

Query: 422 DSISTQFGFVLSAIQLKHEFINLSLLGYFKVGFGKFRSNEFID-IFDCGQNSLAMIFTLD 246
           + + T F      ++ +H F    + GY + GF KFRS + +D + D  + +      +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELDELLDKIEKTQDPQRRVD 692

Query: 245 VISQF--KSFMNTSGGTR 198
              +F  K F +  GGTR
Sbjct: 693 KTFKFASKEFFSMEGGTR 710


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
 Frame = +3

Query: 54  TLNLRKSSSVLKMVIKSI--KARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEA 227
           TLNL    + +K+  + I  K  ++F   G    E  +  + G    AV + A  GV   
Sbjct: 372 TLNLVSVINSVKLTQEEICKKFSKLFKGLGKLDTEYHIELKDGAEPYAVHT-ARRGVISR 430

Query: 228 LELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREI----DELMLKLDGTEN 395
           +E    + +++    V+    N    I  +LT+ N  V ++R I    DE + +L G + 
Sbjct: 431 VE----VPTDWCAPMVVVPKSNDQVRICVDLTRLNDSVKRERHILPSVDETLAQLGGAKV 486

Query: 396 KSKLGANA 419
            SKL AN+
Sbjct: 487 FSKLDANS 494


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 279 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 401
           TA KN+ +  A ELT  N + TQ+ +  +L   L  TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 243 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 356
           N+K+E+ G+    AI ++ EL+ P   +    L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258


>SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)
          Length = 316

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 279 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIL 425
           T + +I E  A E+T+    V  +   D L+++++G EN+S+   N I+
Sbjct: 230 TGVGSIEE-DAAEITERLETVATRETTDLLLIRVEGLENRSRRNNNIII 277


>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 219 HEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQ 347
           H+A ++RD      +G+     +  IN L+AP +   +  +T+
Sbjct: 330 HQAQDVRDATSKALYGRLFSWIVNKINHLLAPSIESRDQHLTE 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,841,354
Number of Sequences: 59808
Number of extensions: 298079
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)