Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0868
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74030.1 68414.m08573 enolase, putative similar to Swiss-Prot...   175   1e-44
At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696 ...   142   2e-34
At2g29560.1 68415.m03590 enolase, putative similar to enolase [S...   139   1e-33
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa...    29   1.8  
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    29   3.1  
At1g64050.1 68414.m07255 expressed protein                             28   4.1  
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    27   7.2  
At1g76520.2 68414.m08905 auxin efflux carrier family protein con...    27   7.2  
At1g76520.1 68414.m08904 auxin efflux carrier family protein con...    27   7.2  
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr...    27   9.5  
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr...    27   9.5  

>At1g74030.1 68414.m08573 enolase, putative similar to
           Swiss-Prot:P15007 enolase (EC 4.2.1.11)
           (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate
           hydro-lyase) [Drosophila melanogaster]
          Length = 477

 Score =  175 bits (427), Expect = 1e-44
 Identities = 88/141 (62%), Positives = 108/141 (76%)
 Frame = +3

Query: 96  IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 275
           +K +KARQI DSRGNPTVEVDL+T+  L+R+AVPSGASTG++EALELRD  KS Y GKGV
Sbjct: 51  VKGVKARQIIDSRGNPTVEVDLITD-DLYRSAVPSGASTGIYEALELRDGDKSVYGGKGV 109

Query: 276 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 455
           L AIKNINEL+AP+L    ++V  Q ++D LML+LDGT NKSKLGANAILGVSL      
Sbjct: 110 LQAIKNINELVAPKL--IGVDVRNQADVDALMLELDGTPNKSKLGANAILGVSLSVCRAG 167

Query: 456 XXXXNVPLYKHLADLAGNNDI 518
                VPLYKH+ + +G  ++
Sbjct: 168 AGAKGVPLYKHIQETSGTKEL 188



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 517 LVLPVPAFNVINGGSHAG 570
           LV+PVPAFNVINGGSHAG
Sbjct: 188 LVMPVPAFNVINGGSHAG 205


>At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696
           enolase (EC 4.2.1.11) (2-phosphoglycerate
           dehydratase)(2-phospho-D- glycerate hydro-lyase)
           [Arabidopsis thaliana]
          Length = 444

 Score =  142 bits (343), Expect = 2e-34
 Identities = 83/148 (56%), Positives = 99/148 (66%), Gaps = 7/148 (4%)
 Frame = +3

Query: 96  IKSIKARQIFDSRGNPTVEVDLVTELGL-FRAAVPSGASTGVHEALELRDNIKSEYHGKG 272
           I  +KARQIFDSRGNPTVEVD+ T  G+   AAVPSGASTG++EALELRD   S+Y GKG
Sbjct: 4   ITVVKARQIFDSRGNPTVEVDIHTSNGIKVTAAVPSGASTGIYEALELRDG-GSDYLGKG 62

Query: 273 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 434
           V  A+ N+N +I P L     + TQQ  ID  M+ +LDGT+N     K KLGANAIL VS
Sbjct: 63  VSKAVGNVNNIIGPALI--GKDPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVS 120

Query: 435 LXXXXXXXXXXNVPLYKHLADLAGNNDI 518
           L           +PLYKH+A+LAGN  I
Sbjct: 121 LAVCKAGAVVSGIPLYKHIANLAGNPKI 148



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 517 LVLPVPAFNVINGGSHAG 570
           +VLPVPAFNVINGGSHAG
Sbjct: 148 IVLPVPAFNVINGGSHAG 165


>At2g29560.1 68415.m03590 enolase, putative similar to enolase
           [Spinacia oleracea] gi|8919731|emb|CAB96173
          Length = 475

 Score =  139 bits (337), Expect = 1e-33
 Identities = 75/138 (54%), Positives = 92/138 (66%)
 Frame = +3

Query: 93  VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKG 272
           VI  +KARQI DSRG PTVEVDL T  G+FRA+VPSG S+G +EA+ELRD  K  Y G  
Sbjct: 46  VITKVKARQILDSRGIPTVEVDLHTNKGVFRASVPSGDSSGTYEAIELRDGDKGMYLGNS 105

Query: 273 VLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXX 452
           V  A+KNINE I+  L    ++   Q +ID+ M+ LD TE KS+LGANAIL VS+     
Sbjct: 106 VAKAVKNINEKISEAL--IGMDPKLQGQIDQAMIDLDKTEKKSELGANAILAVSIAACKA 163

Query: 453 XXXXXNVPLYKHLADLAG 506
                 VPL KHL+DL+G
Sbjct: 164 GAAEKEVPLCKHLSDLSG 181



 Score = 31.9 bits (69), Expect = 0.33
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 517 LVLPVPAFNVINGGSHA 567
           +VLPVPAF V++GG HA
Sbjct: 185 MVLPVPAFTVLSGGKHA 201


>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 688

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +3

Query: 222 EALELRDNIKSEYHGKG--VLTAIKNINELIA-PELTKANLEVTQQREIDELM 371
           E+ E+ D +  EY  K   +LT +K++   ++ PELT+  L++  Q + DEL+
Sbjct: 143 ESEEIADGV-DEYETKEDIMLTILKDLRSSVSEPELTEEQLKMNDQLQEDELL 194


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +3

Query: 123 FDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINE 302
           F S G P  E + +TE  L       G+S G  + +E  +  +     +    +  ++ E
Sbjct: 308 FSSFGRPIPEKENITEFALDVIRELEGSSEGTRDLVEFNEKWQQNQTARATTQSRVSLKE 367

Query: 303 LIAPELTKANL 335
            IA  +++  L
Sbjct: 368 AIAASVSRGKL 378


>At1g64050.1 68414.m07255 expressed protein
          Length = 668

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 217 TPVEAPEGTAARNKPSSVTRSTSTVGLPRESKI 119
           +P+ +PE   +  K   ++RS+S  G PR +K+
Sbjct: 107 SPIASPESAESPRKRGKLSRSSSGNGTPRRTKL 139


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/89 (22%), Positives = 42/89 (47%)
 Frame = +3

Query: 90  MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 269
           +V +SI   ++ +   + + +VD V E    + ++PS  S  +HE    R N+   +HG 
Sbjct: 377 LVQESIDGAKVGERAVSSSSDVDTV-ECRNCKHSIPS-RSIALHEVYCSRHNVVCNHHGC 434

Query: 270 GVLTAIKNINELIAPELTKANLEVTQQRE 356
           G++  ++     +  E     L+ T+  +
Sbjct: 435 GIVLRVEEAKNHLHCEKCGKALQPTEMEK 463


>At1g76520.2 68414.m08905 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 390

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 105 IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNI 248
           +K  ++F +   P VE+ L+T +G + A    G +   H+A +  +NI
Sbjct: 2   VKLLELFITSSKPVVEILLITSVGFYMAL--DGVNLLGHDARKYLNNI 47


>At1g76520.1 68414.m08904 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 390

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 105 IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNI 248
           +K  ++F +   P VE+ L+T +G + A    G +   H+A +  +NI
Sbjct: 2   VKLLELFITSSKPVVEILLITSVGFYMAL--DGVNLLGHDARKYLNNI 47


>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 340

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 581 QVYXPACDPPLITLKAGTG 525
           Q   P+CDPPLI   +G+G
Sbjct: 42  QTQTPSCDPPLILRGSGSG 60


>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 413

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 581 QVYXPACDPPLITLKAGTG 525
           Q   P+CDPPLI   +G+G
Sbjct: 42  QTQTPSCDPPLILRGSGSG 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,940,971
Number of Sequences: 28952
Number of extensions: 211968
Number of successful extensions: 553
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)