Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0866
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58070.1 68418.m07267 lipocalin, putative similar to temperat... 54 6e-08
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 31 0.66
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 29 2.0
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu... 29 2.0
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s... 29 3.5
At5g36740.1 68418.m04402 PHD finger family protein 28 4.7
At5g36670.1 68418.m04388 PHD finger family protein 28 4.7
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative... 28 4.7
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 28 6.2
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil... 27 8.2
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil... 27 8.2
>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
stress-induced lipocalin [Triticum aestivum] GI:18650668
Length = 186
Score = 54.4 bits (125), Expect = 6e-08
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Frame = +2
Query: 98 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 271
E++ V N+ Y G WYEI+ FP+ + KNG + A Y L D + V N +G +
Sbjct: 6 EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65
Query: 272 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQV 451
+IEG+A D + AKL V F + + DY I + ++ + +
Sbjct: 66 FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122
Query: 452 FVWILSRNKKLE 487
++WILSR ++E
Sbjct: 123 YLWILSRTAQME 134
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 179 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 358
EK+GK SS K + + V+ ++D +++ E L K++K T K ++
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572
Query: 359 DGSVQILATDYNNYA 403
Q+L+ + NN A
Sbjct: 573 VEEAQVLSVEVNNVA 587
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +2
Query: 179 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 358
EK+GK SS K + + V+ ++D +++ E L K++K + K ++
Sbjct: 665 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSK--KKDSLNI 722
Query: 359 DGSVQILATDYNNYA 403
Q+L+ + NN A
Sbjct: 723 VEEAQVLSVEVNNVA 737
>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
putative (AVDE1) similar to EST gb|N37612
Length = 462
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 110 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 247
V NFN++ + G WY I+ N + C E+ EGD V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248
>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
similar to SP|P04051 DNA-directed RNA polymerase III
largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
contains InterPro accession IPR000722: RNA polymerase,
alpha subunit
Length = 1328
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 272 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIA 409
Y + ++ KA F G ++DG IL DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 194 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 301
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 194 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 301
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069
>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 345
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +2
Query: 155 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 253
+S FP ES+ + K ++ E+KL G + V VKN+++
Sbjct: 14 VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 467 SRNKKLEGDAKTAXDNFIKEHSKE 538
+R +K EG+ TA I+EHSK+
Sbjct: 548 NRKRKAEGECSTAETESIEEHSKD 571
>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 312
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 218 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYN 394
EGDV++VKN+ ++ G K T D +N A L T + G + YN
Sbjct: 91 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDT--IMVPYN 148
Query: 395 N 397
N
Sbjct: 149 N 149
>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 280
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 218 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYN 394
EGDV++VKN+ ++ G K T D +N A L T + G + YN
Sbjct: 59 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDT--IMVPYN 116
Query: 395 N 397
N
Sbjct: 117 N 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,326
Number of Sequences: 28952
Number of extensions: 231498
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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