Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0862
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)                    30   0.94 
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)                   29   1.2  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   2.9  
SB_24326| Best HMM Match : DENN (HMM E-Value=0)                        28   2.9  
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)                    28   2.9  
SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   5.0  
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)            27   5.0  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         27   8.7  
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)                     27   8.7  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
          Length = 609

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 151 PAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAXLDGFXPD 5
           P +LF+    G I  +  ++LFV+ S   +V    +++F A  DG   D
Sbjct: 48  PVVLFVASSDGGIVFNVPVVLFVASSDGGIVFNVLVVLFVASSDGGSSD 96



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 151 PAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAXLDG 17
           P +LF     G I  +  ++LFV+ S   +V    +++F A  DG
Sbjct: 31  PVVLFRGSSDGGILFNVPVVLFVASSDGGIVFNVPVVLFVASSDG 75


>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 144 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 314
           I   + ++MR+ R +  R ++ +LQE   E++R+D    E++ L    I +D   KD L
Sbjct: 44  IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 338 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 234
           N+   ++ +H++  G    D M E++HF  W++V  P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397


>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
          Length = 1281

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 3    VSGLKPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATH 164
            + G+  + K  +II   YY R   +   NKR  +E++I+ T  L N      TH
Sbjct: 1000 IGGVASAFKFLEIIHTNYYGRDIREETANKREEDELSIVSTGSLSNLSDQSDTH 1053


>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 736

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 198 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN-----INGLQLTQP 362
           G+    +E +RE    Y   VSA +H +     D +  + +LD N+      +GL +T  
Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515

Query: 363 ATQGGYGG 386
            ++G  GG
Sbjct: 516 ISEGAGGG 523


>SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 39  IIIEKYYTRLTLDFDTNKRI--CEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRG 200
           II   + T+L       K I  C E   + ++P+  ++     H+M R +H  +RG
Sbjct: 48  IITTNFRTKLATTLPPKKNIDMCPEFDAVTSQPVTAEVPRQTNHVMTRSQHRILRG 103


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +3

Query: 102 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 281
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+   +  EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514

Query: 282 I 284
           +
Sbjct: 515 M 515


>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
          Length = 163

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
 Frame = +3

Query: 126 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 296
           K LR ++  FA+H  RRLR + +R     K+ +     ++ Y P VS A+   II ++D 
Sbjct: 56  KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114

Query: 297 DTKDMLKMLD----FNNINGLQLTQPATQ 371
             +  + + D      ++N   + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 54  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 143
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 165 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 308
           L +R RHS+    S     + RE+  +++ ++  LE++    D DT++
Sbjct: 54  LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -2

Query: 389  PATIATLGSWLC*LQAINIVEVQHL----QHILGVGVYFDDVMFESRHFWDIVVTPLTLL 222
            P T+ T  + +  +QAI++ ++QH+    Q  + V +  D    +S  + +  VT    L
Sbjct: 1034 PVTVVTDDASVAAIQAIDVTDIQHISGGTQITIPVAIATDTGTIQSHTYDESAVTAFGRL 1093

Query: 221  FLKFDRD 201
               F+ D
Sbjct: 1094 ITAFNWD 1100


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 252 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 347
           PE+S + H I    PD +D   +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140


>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
          Length = 275

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 190 KCEESLSNFRKRSVRGVTTMSQKCLL 267
           KC  SL  F+K  ++G T +S+K L+
Sbjct: 112 KCILSLGRFKKAKIKGQTFVSKKALV 137


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 76  ILIQIKEYVKKSLSFLPSLLGIKLLDL 156
           +L  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,154,299
Number of Sequences: 59808
Number of extensions: 198605
Number of successful extensions: 531
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)