Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0860
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 100 9e-22
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 97 8e-21
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 97 1e-20
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 42 6e-04
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 40 0.001
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 36 0.022
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 36 0.022
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 36 0.029
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 36 0.029
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 36 0.029
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 36 0.029
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 36 0.029
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 36 0.029
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 36 0.038
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 36 0.038
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 36 0.038
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 35 0.050
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 35 0.050
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 35 0.066
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 35 0.066
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 35 0.066
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 35 0.066
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 34 0.088
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 34 0.088
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 34 0.088
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 34 0.088
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 34 0.088
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 34 0.088
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 34 0.12
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 34 0.12
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 34 0.12
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 34 0.12
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 33 0.15
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 33 0.15
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 33 0.15
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 33 0.15
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 33 0.20
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 33 0.20
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 33 0.20
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 33 0.20
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 33 0.27
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.27
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 33 0.27
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 32 0.35
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 32 0.35
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 32 0.35
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 32 0.35
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 32 0.35
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 32 0.35
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 32 0.35
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 32 0.35
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 32 0.35
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 32 0.47
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 32 0.47
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 32 0.47
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 32 0.47
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 32 0.47
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 31 0.62
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 31 0.62
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 31 0.62
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 31 0.82
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 31 0.82
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 31 0.82
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 0.82
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 31 0.82
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 31 0.82
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 31 0.82
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 31 0.82
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 31 1.1
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 31 1.1
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 31 1.1
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 31 1.1
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 1.1
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 31 1.1
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 31 1.1
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 31 1.1
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 31 1.1
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 31 1.1
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 30 1.4
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 30 1.4
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 30 1.4
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 30 1.4
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 30 1.4
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 30 1.4
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 30 1.4
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 30 1.4
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 30 1.4
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 30 1.4
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 30 1.4
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 30 1.9
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 30 1.9
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 30 1.9
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 30 1.9
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 30 1.9
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 30 1.9
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 30 1.9
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 30 1.9
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 30 1.9
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 30 1.9
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 30 1.9
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 2.5
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 29 2.5
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 29 2.5
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 29 2.5
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 29 3.3
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 29 3.3
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 29 3.3
At4g24120.1 68417.m03462 transporter, putative similar to iron-p... 29 3.3
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 29 3.3
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 29 3.3
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 29 3.3
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 3.3
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 29 4.4
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 29 4.4
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 4.4
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 4.4
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 29 4.4
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 4.4
At5g60050.1 68418.m07530 PRLI-interacting factor-related contain... 28 5.8
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 28 5.8
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 28 5.8
At5g14050.1 68418.m01644 transducin family protein / WD-40 repea... 28 5.8
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 28 5.8
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 28 5.8
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 28 5.8
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 28 5.8
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 28 5.8
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 5.8
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 5.8
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 28 7.6
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 28 7.6
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 28 7.6
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 28 7.6
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 28 7.6
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 28 7.6
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 28 7.6
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 28 7.6
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 28 7.6
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 100 bits (240), Expect = 9e-22
Identities = 45/78 (57%), Positives = 60/78 (76%)
Frame = +1
Query: 58 MSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLY 237
M+E L L+GT+R H VT IAT D+I+S+SRDK++I+WKLT+D+ YG+ Q+RL
Sbjct: 1 MAEGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT 60
Query: 238 GHSHFISDVVLSSDGNYA 291
GHSHF+ DVVLSSDG +A
Sbjct: 61 GHSHFVEDVVLSSDGQFA 78
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/52 (73%), Positives = 44/52 (84%), Gaps = 2/52 (3%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQD--DGHSDWGVMC 662
++DVLSVAFS+DNRQIVS SRD+TIKLWNTL ECKYTI + +GH DW V C
Sbjct: 105 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW-VSC 155
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
SGSWD LRLWDLAAG +TRRF HTK
Sbjct: 80 SGSWDGELRLWDLAAGVSTRRFVGHTK 106
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 94 GHNGWVTQIATNPK-YPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 270
GH WV+ + +P I+S+S DKT+ VW L+ + + L GH+ ++S V +
Sbjct: 148 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTGYVSTVAV 202
Query: 271 SSDGN 285
S DG+
Sbjct: 203 SPDGS 207
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGI 219
KLR TL GH G+V+ +A +P + S +D +++W L + Y +
Sbjct: 185 KLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSL 232
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 689 PLLYPXGWDRTVKVWHLTNC 748
P + WD+TVKVW+L+NC
Sbjct: 165 PTIVSASWDKTVKVWNLSNC 184
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 522 VLSVAFSVDNRQ--IVSGSRDKTIKLWNTLAECKYTIQDDGHSDW 650
V V FS + Q IVS S DKT+K+WN L+ CK GH+ +
Sbjct: 153 VSCVRFSPNTLQPTIVSASWDKTVKVWN-LSNCKLRSTLAGHTGY 196
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 287 TPFSGSWDKTLRLWDLAAGKTTRRFEDHT 373
T S SWDKT+++W+L+ K HT
Sbjct: 166 TIVSASWDKTVKVWNLSNCKLRSTLAGHT 194
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 522 VLSVAFSVDNRQI-VSGSRDKTIKLWNTLAECK 617
V ++A +DN I VS SRDK+I LW + K
Sbjct: 18 VTAIATPIDNADIIVSASRDKSIILWKLTKDDK 50
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 97.5 bits (232), Expect = 8e-21
Identities = 43/78 (55%), Positives = 60/78 (76%)
Frame = +1
Query: 58 MSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLY 237
M+E L L+G +R H VT IAT D+I+++SRDK++I+WKLT+D+ +YG+ Q+RL
Sbjct: 1 MAEGLVLKGIMRAHTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLT 60
Query: 238 GHSHFISDVVLSSDGNYA 291
GHSHF+ DVVLSSDG +A
Sbjct: 61 GHSHFVEDVVLSSDGQFA 78
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/51 (74%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQD-DGHSDWGVMC 662
++DVLSVAFS DNRQIVS SRD+TIKLWNTL ECKYTI + DGH +W V C
Sbjct: 105 TKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEW-VSC 154
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
SGSWD LRLWDLA G+TTRRF HTK
Sbjct: 80 SGSWDGELRLWDLATGETTRRFVGHTK 106
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 94 GHNGWVTQIATNPK-YPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 270
GH WV+ + +P I+S+S DKT+ VW L N + + L GHS +++ V +
Sbjct: 147 GHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNL----QNCKL-RNSLVGHSGYLNTVAV 201
Query: 271 SSDGN 285
S DG+
Sbjct: 202 SPDGS 206
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 64 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGI 219
+ KLR +L GH+G++ +A +P + S +D +++W L + Y +
Sbjct: 181 QNCKLRNSLVGHSGYLNTVAVSPD-GSLCASGGKDGVILLWDLAEGKKLYSL 231
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 689 PLLYPXGWDRTVKVWHLTNC 748
P + WD+TVKVW+L NC
Sbjct: 164 PTIVSASWDKTVKVWNLQNC 183
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 558 IVSGSRDKTIKLWNTLAECKYTIQDDGHSDW 650
IVS S DKT+K+WN L CK GHS +
Sbjct: 166 IVSASWDKTVKVWN-LQNCKLRNSLVGHSGY 195
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 281 VITPFSGSWDKTLRLWDLAAGKTTRRFEDHT 373
V T S SWDKT+++W+L K H+
Sbjct: 163 VPTIVSASWDKTVKVWNLQNCKLRNSLVGHS 193
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 96.7 bits (230), Expect = 1e-20
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +1
Query: 58 MSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLY 237
M+E L L+GT+ H VT IAT D+I++SSRDK++I+WKLT+++ +YG+ Q+R+
Sbjct: 1 MAEGLVLKGTMCAHTDMVTAIATPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMT 60
Query: 238 GHSHFISDVVLSSDGNYA 291
GHSHF+ DVVLSSDG +A
Sbjct: 61 GHSHFVQDVVLSSDGQFA 78
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/51 (74%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQD-DGHSDWGVMC 662
++DVLSVAFS DNRQIVS SRD+TIKLWNTL ECKYTI + DGH +W V C
Sbjct: 105 TKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEW-VSC 154
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
SGSWD LRLWDLA G++TRRF HTK
Sbjct: 80 SGSWDGELRLWDLATGESTRRFVGHTK 106
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 64 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGI 219
+ KLR TL GH+G++ +A +P + S +D +++W L + Y +
Sbjct: 181 QNCKLRNTLAGHSGYLNTVAVSPD-GSLCASGGKDGVILLWDLAEGKKLYSL 231
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 94 GHNGWVTQIATNPK-YPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 270
GH WV+ + +P I+S+S DKT+ VW L N + + L GHS +++ V +
Sbjct: 147 GHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNL----QNCKL-RNTLAGHSGYLNTVAV 201
Query: 271 SSDGN 285
S DG+
Sbjct: 202 SPDGS 206
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 689 PLLYPXGWDRTVKVWHLTNC 748
P + WD+TVKVW+L NC
Sbjct: 164 PTIVSASWDKTVKVWNLQNC 183
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 558 IVSGSRDKTIKLWNTLAECKYTIQDDGHSDW 650
IVS S DKT+K+WN L CK GHS +
Sbjct: 166 IVSASWDKTVKVWN-LQNCKLRNTLAGHSGY 195
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 522 VLSVAFSVDNRQ-IVSGSRDKTIKLWNTLAECK 617
V ++A VDN IV+ SRDK+I LW E K
Sbjct: 18 VTAIATPVDNSDVIVTSSRDKSIILWKLTKEDK 50
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 281 VITPFSGSWDKTLRLWDLAAGKTTRRFEDHT 373
V T S SWDKT+++W+L K H+
Sbjct: 163 VPTIVSASWDKTVKVWNLQNCKLRNTLAGHS 193
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK-YTIQDDGHSDW 650
+E VL V+FS D +Q+ SGS D T++LW+ E +T + GH +W
Sbjct: 109 AEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCK--GHKNW 153
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQD-DGHSD 647
V V++S D+R ++SGS+D T+K+W K QD GH+D
Sbjct: 405 VYQVSWSADSRLLLSGSKDSTLKIWE--IRTKKLKQDLPGHAD 445
Score = 34.7 bits (76), Expect(2) = 0.001
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 139 PDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVLSSDGNY 288
P+ ++S S D T+ +W+ + + P+KRL GH ++ V S DG +
Sbjct: 329 PERLVSGSDDFTMFLWEPSVSKQ----PKKRLTGHQQLVNHVYFSPDGKW 374
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLW 596
+++V +V +S D ++VSG +D+ +KLW
Sbjct: 444 ADEVFAVDWSPDGEKVVSGGKDRVLKLW 471
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 91 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 270
RGH G V Q++ + ++LS S+D TL +W++ + +P GH+ + V
Sbjct: 399 RGHVGPVYQVSWSAD-SRLLLSGSKDSTLKIWEIRTKKLKQDLP-----GHADEVFAVDW 452
Query: 271 SSDG 282
S DG
Sbjct: 453 SPDG 456
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
VL+VA+S D + +VSGS+ I WN
Sbjct: 154 VLTVAWSPDGKHLVSGSKSGEICCWN 179
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 531 VAFSVDNRQIVSGSRDKTIKLWN 599
V FS D + I S S DK+++LWN
Sbjct: 366 VYFSPDGKWIASASFDKSVRLWN 388
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 85 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDV 264
T +GH WV +A +P ++ S S+ + W + E G P L GH +I+ +
Sbjct: 146 TCKGHKNWVLTVAWSPDGKHLV-SGSKSGEICCWNPKKGELE-GSP---LTGHKKWITGI 200
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 558 IVSGSRDKTIKLWNTLAECKYTIQDDGHSDW 650
I +GS+D TIK+W T + K + GH W
Sbjct: 255 IYTGSQDCTIKMWET-TQGKLIRELKGHGHW 284
Score = 24.6 bits (51), Expect(2) = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 55 KMSETL--KLRGTLRGHNGWVTQIATNPKY 138
KM ET KL L+GH W+ +A + +Y
Sbjct: 265 KMWETTQGKLIRELKGHGHWINSLALSTEY 294
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/89 (32%), Positives = 46/89 (51%)
Frame = +1
Query: 22 SGXSLLFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRD 201
SG ++KP+ + TL GH ++ + + +++ S+S DKT+I+W T
Sbjct: 24 SGNVPIYKPYRHLK-------TLEGHTAAISCVKFSND-GNLLASASVDKTMILWSAT-- 73
Query: 202 ENNYGIPQKRLYGHSHFISDVVLSSDGNY 288
NY + R GHS ISD+ SSD +Y
Sbjct: 74 --NYSLIH-RYEGHSSGISDLAWSSDSHY 99
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHT 373
SGS+D+T+R+W++ GK R + H+
Sbjct: 145 SGSFDETIRIWEVKTGKCVRMIKAHS 170
Score = 31.5 bits (68), Expect = 0.62
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 525 LSVAFSVDN-RQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMCXILTQSCQPHYCI 701
++ AFSV N + IVSGS D + LW+ A + +GH+D +++ SC P
Sbjct: 261 ITSAFSVTNGKYIVSGSEDNCVYLWDLQAR-NILQRLEGHTD-----AVISVSCHP---- 310
Query: 702 LXVGTELSRSG 734
V E+S SG
Sbjct: 311 --VQNEISSSG 319
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHT 373
SGS D + LWDL A +R E HT
Sbjct: 275 SGSEDNCVYLWDLQARNILQRLEGHT 300
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTL-AECKYTIQDD 635
S + SV F+ D IVS S D + K+W+ C T+ DD
Sbjct: 170 SMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLIDD 211
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHF 252
KLR L GH+ V I + I +SSRD+T+ VW L + +K L GH+ F
Sbjct: 11 KLRCELHGHDDDVRGICVCND--ENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSF 68
Query: 253 I 255
+
Sbjct: 69 V 69
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHF 252
KLR L GH+ V I + I +SSRD+T+ VW L + +K L GH+ F
Sbjct: 11 KLRCELHGHDDDVRGICVCND--ENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSF 68
Query: 253 I 255
+
Sbjct: 69 V 69
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 64 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 192
E K G L GH G V + ++P D+++S SRD +W L
Sbjct: 158 EENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDL 200
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 94 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 213
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 97 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVLSS 276
H+ ++ +A +P P +LSSS D + +W EN + Q GHSH++ VV +
Sbjct: 98 HSDYIRCVAVHPTLP-YVLSSSDDMLIKLWDW---ENGWACTQI-FEGHSHYVMQVVFNP 152
Query: 277 DGNYAF 294
F
Sbjct: 153 KDTNTF 158
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 94 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 213
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 97 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVLSS 276
H+ ++ +A +P P +LSSS D + +W EN + Q GHSH++ VV +
Sbjct: 98 HSDYIRCVAVHPTLP-YVLSSSDDMLIKLWDW---ENGWACTQI-FEGHSHYVMQVVFNP 152
Query: 277 DGNYAF 294
F
Sbjct: 153 KDTNTF 158
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 94 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 213
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 97 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVLSS 276
H+ ++ +A +P P +LSSS D + +W EN + Q GHSH++ VV +
Sbjct: 98 HSDYIRCVAVHPTLP-YVLSSSDDMLIKLWDW---ENGWACTQI-FEGHSHYVMQVVFNP 152
Query: 277 DGNYAF 294
F
Sbjct: 153 KDTNTF 158
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 94 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 213
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 94 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 213
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 236 TVIRTSFLMLCCL-VTVITPFSGSWDKTLRLWDLAAGKTTRRFEDHT 373
TV+ TS CL + +T FSG D LRLWD+ GK H+
Sbjct: 353 TVLFTSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHS 399
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 477 FARQKIVFVW*KSEDVLSVAFSVDNRQIVSGSRDKTIKLWNTL-AECKYTIQ 629
FA + V + + DVL+VAF D +Q+ S + D I W+T+ YTI+
Sbjct: 507 FASKGTVETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIE 558
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTT 352
S SWD T+RLWD+ A K T
Sbjct: 494 SSSWDYTVRLWDVFASKGT 512
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 477 FARQKIVFVW*KSEDVLSVAFSVDNRQIVSGSRDKTIKLWNTL-AECKYTIQ 629
FA + V + + DVL+VAF D +Q+ S + D I W+T+ YTI+
Sbjct: 547 FASKGTVETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIE 598
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTT 352
S SWD T+RLWD+ A K T
Sbjct: 534 SSSWDYTVRLWDVFASKGT 552
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 35.1 bits (77), Expect = 0.050
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 85 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDV 264
TL HN V+ + + ++ S+S DKT+ + + + P + GH + ISDV
Sbjct: 19 TLTSHNRAVSSVKFSSD-GRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDV 77
Query: 265 VLSSDGNY 288
SSD +
Sbjct: 78 AFSSDARF 85
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
+ VAFS D R IVS S DKT+KLW+
Sbjct: 74 ISDVAFSSDARFIVSASDDKTLKLWD 99
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 64 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGH 243
ET L TL GH + + NP+ +MI+S S D+T+ +W +T G K L H
Sbjct: 101 ETGSLIKTLIGHTNYAFCVNFNPQ-SNMIVSGSFDETVRIWDVTT-----GKCLKVLPAH 154
Query: 244 SHFISDVVLSSDGN 285
S ++ V + DG+
Sbjct: 155 SDPVTAVDFNRDGS 168
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHT 373
SGS+D+T+R+WD+ GK + H+
Sbjct: 130 SGSFDETVRIWDVTTGKCLKVLPAHS 155
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 525 LSVAFSVDN-RQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMCXILTQSCQPHYCI 701
+S AFSV N ++IVSGS D + +W L K + +GH++ ++ +C P +
Sbjct: 246 ISSAFSVTNGKRIVSGSEDNCVHMWE-LNSKKLLQKLEGHTE-----TVMNVACHPTENL 299
Query: 702 LXVGT 716
+ G+
Sbjct: 300 IASGS 304
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTKV*QNF*FC*GVN 412
S S DKTL+LWD+ G + HT N+ FC N
Sbjct: 88 SASDDKTLKLWDVETGSLIKTLIGHT----NYAFCVNFN 122
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 531 VAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSD 647
V F+ + IVSGS D+T+++W+ T +C + HSD
Sbjct: 119 VNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVL--PAHSD 156
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 611
+E V++VA I SGS DKT+++W E
Sbjct: 285 TETVMNVACHPTENLIASGSLDKTVRIWTQKKE 317
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNT-LAECKYTIQDD 635
S+ V +V F+ D IVS S D ++W++ C T+ DD
Sbjct: 155 SDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDD 196
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTKV*QN 388
SGS D + +W+L + K ++ E HT+ N
Sbjct: 260 SGSEDNCVHMWELNSKKLLQKLEGHTETVMN 290
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 35.1 bits (77), Expect = 0.050
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHF 252
+L T GH V+ I PK ++LS+ D + +W D N G + GH+
Sbjct: 273 RLVHTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIW----DVYNSGKCMRTYMGHAKA 328
Query: 253 ISDVVLSSDGN 285
+ D+ S+DG+
Sbjct: 329 VRDICFSNDGS 339
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 34.7 bits (76), Expect = 0.066
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 82 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISD 261
G + GH V+ +A NP Y I S+S D + +W ++ P GH +
Sbjct: 50 GAMDGHRDGVSCMAKNPNYLKGIFSASMDGDIRLWDISSRRTVCQFP-----GHQGAVRG 104
Query: 262 VVLSSDGN 285
+ S+DGN
Sbjct: 105 LTASTDGN 112
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 510 KSEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 608
+ + V V +S D ++SGS D ++LW A
Sbjct: 321 RMQRVFCVKYSCDATYVISGSDDTNLRLWKAKA 353
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 34.7 bits (76), Expect = 0.066
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 85 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 204
T+ GH+ T ++ N P+++ + S+D+T+ +W L+ +E
Sbjct: 364 TINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNE 403
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
S S DK +++WD+A G E HTK
Sbjct: 251 SASADKKVKVWDVATGTCKITMEHHTK 277
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 34.7 bits (76), Expect = 0.066
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 7 PXPDASGXSLLFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 186
P A G + + SET+ +L GH V +I T P P +++++S+D+++ +W
Sbjct: 99 PYVAAGGVKGIIRVIDVNSETI--HKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLW 156
Query: 187 KL 192
+
Sbjct: 157 NV 158
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 34.7 bits (76), Expect = 0.066
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLAAGKTTRRFEDH 370
+SGSWDKTL++W L+ K E H
Sbjct: 261 YSGSWDKTLKVWRLSDSKCLESIEAH 286
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 692 LLYPXGWDRTVKVWHLTN 745
LLY WD+T+KVW L++
Sbjct: 259 LLYSGSWDKTLKVWRLSD 276
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 186
L GH+ V ++ NPK P M+ S+S D+T+ +W
Sbjct: 481 LSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 267
++GH GWV +A +P + + S D+T+ +W + G+ + L GH + +
Sbjct: 172 IQGHLGWVRSVAFDPS-NEWFCTGSADRTIKIWDVAT-----GVLKLTLTGHIEQVRGLA 225
Query: 268 LSSDGNYAF 294
+S+ Y F
Sbjct: 226 VSNRHTYMF 234
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
V SVAF N +GS D+TIK+W+
Sbjct: 179 VRSVAFDPSNEWFCTGSADRTIKIWD 204
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
+GS D T++ WDL GKT H K
Sbjct: 319 TGSHDTTIKFWDLRYGKTMSTLTHHKK 345
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 34.3 bits (75), Expect = 0.088
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 267
L+GH GWV +A +P + + S D+T+ +W + G+ + L GH + +
Sbjct: 166 LQGHLGWVRSVAFDPS-NEWFCTGSADRTIKIWDVAT-----GVLKLTLTGHIGQVRGLA 219
Query: 268 LSSDGNYAF 294
+S+ Y F
Sbjct: 220 VSNRHTYMF 228
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 495 VFVW*KSEDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
+FV DV SV + Q+++GS D TIK W+
Sbjct: 289 IFVLPHDSDVFSVLARPTDPQVITGSHDSTIKFWD 323
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
V SVAF N +GS D+TIK+W+
Sbjct: 173 VRSVAFDPSNEWFCTGSADRTIKIWD 198
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
+GS D T++ WDL GK+ +H K
Sbjct: 312 TGSHDSTIKFWDLRYGKSMATITNHKK 338
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 76 LRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQ 225
LR RGH+ VT +A + DM+ S S D + VWK++ PQ
Sbjct: 194 LRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQ 243
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 76 LRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQ 225
LR RGH+ VT +A + DM+ S S D + VWK++ PQ
Sbjct: 229 LRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQ 278
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 85 TLRGHNGWVTQIA-TNPKYPDMILSSSRDKTLIVWK 189
TL GH G V Q+A +PK+ ++ S S D +I+WK
Sbjct: 51 TLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWK 86
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 186
L+GH V Q+ +PK+ D++ ++S DK++ +W
Sbjct: 62 LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLW 94
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFE 364
+ S DK++RLWD +GK T++ E
Sbjct: 84 TASGDKSVRLWDARSGKCTQQVE 106
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
V SVA++ + ++ SGS D+T ++WN
Sbjct: 23 VHSVAWNSNGTKLASGSVDQTARIWN 48
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPK--YPDMILSSSRDKTLIVW 186
LRGH G VT IA +P+ P +LSSS D T +W
Sbjct: 325 LRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIW 359
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 267
L+ HNG + + +P + +SS DKT+ +W + + + + +K L GH ++ D V
Sbjct: 207 LQAHNGHILKCLLSPANKYLATASS-DKTVKIWNV----DGFKL-EKVLTGHQRWVWDCV 260
Query: 268 LSSDGNY 288
S DG +
Sbjct: 261 FSVDGEF 267
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 608
+ +V++V F D + + SGS D T+K+W+ A
Sbjct: 78 TNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRA 109
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
+L S N+ + + S DKT+K+WN
Sbjct: 214 ILKCLLSPANKYLATASSDKTVKIWN 239
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 269 CLVTVITPF--SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
C+ +V F + S D T RLW + AGK + ++ H K
Sbjct: 259 CVFSVDGEFLVTASSDMTARLWSMPAGKEVKVYQGHHK 296
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMCXI 668
V FSVD +V+ S D T +LW+ A + + GH V C +
Sbjct: 256 VWDCVFSVDGEFLVTASSDMTARLWSMPAGKEVKVY-QGHHKATVCCAL 303
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 85 TLRGHNGWVTQIA-TNPKYPDMILSSSRDKTLIVWK 189
TL GH G V ++A +PKY ++ S S D +I+WK
Sbjct: 51 TLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWK 86
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWGV 656
V+ + S D IV+GS+DK +K+W +C +I G S GV
Sbjct: 585 VMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDSVMGV 630
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 97 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVLSS 276
H G VT + N K M+ S S+D +I+W + + + RL GH ++D+V
Sbjct: 105 HKGAVTALRYN-KVGSMLASGSKDNDIILWDVVGESGLF-----RLRGHRDQVTDLVFLD 158
Query: 277 DG 282
G
Sbjct: 159 GG 160
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLAAGKTTRRFEDH 370
+SGSWDKTL++W L+ K + H
Sbjct: 265 YSGSWDKTLKVWRLSDSKCLESIQAH 290
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 692 LLYPXGWDRTVKVWHLTN 745
LLY WD+T+KVW L++
Sbjct: 263 LLYSGSWDKTLKVWRLSD 280
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 55 KMSETLKLR-GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 198
+M+ET TLRGH V+ + + K D+I+S+S DK++ VW T+
Sbjct: 232 RMNETKAWEVDTLRGHMNNVSSVMFHAKQ-DIIVSNSEDKSIRVWDATK 279
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDV 264
L GHN +V + +PK D+++S+S D+T+ VW + + P L S SD+
Sbjct: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALKKKSASPADDLMRFSQMNSDL 188
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMC 662
+ +V F +N IVS S D+TI++WN + ++ GH+ + VMC
Sbjct: 96 IRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHY-VMC 140
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 55 KMSETLKLR-GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 198
+M+ET TLRGH V+ + + K D+I+S+S DK++ VW T+
Sbjct: 232 RMNETKAWEVDTLRGHMNNVSSVMFHAKQ-DIIVSNSEDKSIRVWDATK 279
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 192
L GHN +V + +PK D+++S+S D+T+ VW +
Sbjct: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDI 164
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMC 662
+ +V F + IVS S D+TI++WN + ++ GH+ + VMC
Sbjct: 96 IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVL-TGHNHY-VMC 140
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 198
+ H G V Q+ +P + ++ SS D+ L+VW L R
Sbjct: 300 MSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNR 336
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 186
L GH W + NP+Y ++ILS D + +W
Sbjct: 248 LPGHTHWTWAVRCNPEYEELILSVGTDSAVNLW 280
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +3
Query: 519 DVLSVAFSVDNRQIVSGSRDKTIKLWNT 602
DVL +A+S D+ ++S S+DKT++LW T
Sbjct: 274 DVLDLAWS-DSNLLLSASKDKTVRLWRT 300
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 204
L GH G V +A + +++LS+S+DKT+ +W+ D+
Sbjct: 268 LYGHTGDVLDLAWSDS--NLLLSASKDKTVRLWRTGCDQ 304
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 186
L GH W + NP+Y +ILS+ D + +W
Sbjct: 248 LPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLW 280
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMC 662
+DVL +A+S ++ ++S S DKT++LWN ++ ++ HSD+ V C
Sbjct: 514 DDVLDLAWS-KSQHLLSSSMDKTVRLWNLSSQT--CLKVFSHSDY-VTC 558
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDM--ILSSSRDKTLIVW 186
LRGH G VT IA +P+ + +LSSS D T +W
Sbjct: 385 LRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIW 419
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHF 252
++ TL GH+ VT I D++L++S DKT+ +W + D NY + L HS
Sbjct: 255 QILSTLTGHSKKVTSIKFVGD-TDLVLTASSDKTVRIWGCSED-GNY-TSRHTLKDHSAE 311
Query: 253 ISDVVLSSDGNYAFFRFLGQDFAF 324
+ V + + Y L + F
Sbjct: 312 VRAVTVHATNKYFVSASLDSTWCF 335
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYT 623
S+ V S+ F D +++ S DKT+++W + YT
Sbjct: 264 SKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYT 300
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 537 FSVDNRQIVSGSRDKTIKLW--NTLAECKYTIQDDGHSDWGVMC 662
F+V + + SGS DKTIK+W NTL +C T++ + ++C
Sbjct: 264 FAVGGQMLYSGSVDKTIKMWDLNTL-QCIMTLKQHTGTVTSLLC 306
Score = 31.1 bits (67), Expect = 0.82
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 19 ASGXSLLFKPFSKM-SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 192
+SG L++K + S+ K +L GH+G VT A + M+ S S DKT+ +W L
Sbjct: 230 SSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQ---MLYSGSVDKTIKMWDL 285
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLAAGKTTRRFEDHT 373
+SGS DKT+++WDL + + HT
Sbjct: 272 YSGSVDKTIKMWDLNTLQCIMTLKQHT 298
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 91 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 198
R H+G+VT++ + +++SSS DKTL +W L +
Sbjct: 451 RAHDGYVTKLVAPESH--LLVSSSLDKTLRIWDLRK 484
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 531 VAFSVDNRQIV-SGSRDKTIKLWN-TLAECKYTIQ 629
+ F+ +NR IV SGS DK +K+W+ +CK T++
Sbjct: 220 LTFNWENRNIVASGSEDKKVKVWDVATGKCKVTME 254
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
SGS DK +++WD+A GK E H K
Sbjct: 232 SGSEDKKVKVWDVATGKCKVTMEHHEK 258
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 198
L H G V Q+ +P + ++ SS D+ L+VW + R
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINR 337
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 519 DVLSVAFSVDNRQ-IVSGSRDKTIKLWNTLAECKYTIQDDGH 641
DVLSV+ S N +SGS D T +LW+T A + GH
Sbjct: 206 DVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGH 247
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 67 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 195
T+ + L GH G+V+ P +++SS D+T I+W +T
Sbjct: 145 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVT 187
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 296 SGSWDKTLRLWDL-AAGKTTRRFEDH 370
SGS D T RLWD AA + R F H
Sbjct: 222 SGSCDSTARLWDTRAASRAVRTFHGH 247
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 519 DVLSVAFSVDNRQ-IVSGSRDKTIKLWNTLAECKYTIQDDGH 641
DVLSV+ S N +SGS D T +LW+T A + GH
Sbjct: 144 DVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGH 185
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 67 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 195
T+ + L GH G+V+ P +++SS D+T I+W +T
Sbjct: 83 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVT 125
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 296 SGSWDKTLRLWDL-AAGKTTRRFEDH 370
SGS D T RLWD AA + R F H
Sbjct: 160 SGSCDSTARLWDTRAASRAVRTFHGH 185
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 519 DVLSVAFSVDNRQ-IVSGSRDKTIKLWNTLAECKYTIQDDGH 641
DVLSV+ S N +SGS D T +LW+T A + GH
Sbjct: 206 DVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGH 247
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 67 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 195
T+ + L GH G+V+ P +++SS D+T I+W +T
Sbjct: 145 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVT 187
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 296 SGSWDKTLRLWDL-AAGKTTRRFEDH 370
SGS D T RLWD AA + R F H
Sbjct: 222 SGSCDSTARLWDTRAASRAVRTFHGH 247
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/81 (24%), Positives = 43/81 (53%)
Frame = +1
Query: 25 GXSLLFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 204
G + +++ F+ SE++ + LRGH V ++ N ++ + RDK++ +W++ +E
Sbjct: 70 GNTCVWENFATDSESVSV---LRGHESEVKSVSWNAS-GSLLATCGRDKSVWIWEIQPEE 125
Query: 205 NNYGIPQKRLYGHSHFISDVV 267
++ L GHS + V+
Sbjct: 126 DDEFDTIAVLTGHSEDVKMVL 146
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 189
L GH V +A NP +I S S DKT+ +W+
Sbjct: 16 LEGHTDRVWNVAWNPAADGVIASCSADKTVRIWE 49
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLW 596
S+DV FS +N+ I S S DKTI++W
Sbjct: 216 SKDVTDFDFSSNNQYIASSSLDKTIRVW 243
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 88 LRGHNGWVTQI--ATNPKYPDMILSSSRDKTLIVWKLTR 198
L GH+ VT ++N +Y I SSS DKT+ VW+L+R
Sbjct: 212 LTGHSKDVTDFDFSSNNQY---IASSSLDKTIRVWELSR 247
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
E V S+AFS + I SGS DK+I +W+
Sbjct: 542 EPVYSLAFSPNGEYIASGSLDKSIHIWS 569
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 204
+L TL H G + + N K D +L+ S D+T +VW + +E
Sbjct: 356 ELISTLSKHKGPIFSLKWNKK-GDYLLTGSVDRTAVVWDVKAEE 398
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDH 370
+GS DKT+RLWD+ G+ R F H
Sbjct: 516 TGSSDKTVRLWDVQTGECVRIFIGH 540
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWGV 656
VLS+A S D R + SG D TI +W+ + A C + W +
Sbjct: 544 VLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSL 589
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYT 623
V S+++S + + SGS D T+KLW+ + K T
Sbjct: 586 VWSLSYSGEGSLLASGSADCTVKLWDVTSSTKLT 619
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 267
L GH+G V +P D +LSSS D T+ +W + N + K GH++ + D
Sbjct: 414 LLGHSGPVYSATFSPP-GDFVLSSSADTTIRLWSTKLNANL--VCYK---GHNYPVWDAQ 467
Query: 268 LSSDGNY 288
S G+Y
Sbjct: 468 FSPFGHY 474
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 266 CCLVTVITPFSGSWDKTLRLWDLAAGKTTRRFEDH 370
C V +SGSWDKTL++W L+ K + H
Sbjct: 179 CLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAH 213
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 692 LLYPXGWDRTVKVWHLTN 745
++Y WD+T+KVW L++
Sbjct: 186 IIYSGSWDKTLKVWRLSD 203
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE----CKYTIQD 632
S+ V SV F D+ +++ S DKT+++W + C YT+ D
Sbjct: 264 SKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLND 307
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 207
++ TL GH+ VT + D++L++S DKT+ +W+ D N
Sbjct: 255 QILSTLTGHSKKVTSVKFVGD-SDLVLTASADKTVRIWRNPGDGN 298
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE----CKYTIQD 632
S+ V SV F D+ +++ S DKT+++W + C YT+ D
Sbjct: 264 SKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLND 307
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 207
++ TL GH+ VT + D++L++S DKT+ +W+ D N
Sbjct: 255 QILSTLTGHSKKVTSVKFVGD-SDLVLTASADKTVRIWRNPGDGN 298
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 267
L+ HN + + +P + +SS DKT+ +W L + + + +K L GH ++ D
Sbjct: 213 LQAHNSHILKCLLSPGNKYLATASS-DKTVKIWNL----DGFKL-EKVLTGHERWVWDCD 266
Query: 268 LSSDGNY 288
S DG Y
Sbjct: 267 FSMDGEY 273
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDW 650
+L S N+ + + S DKT+K+WN L K GH W
Sbjct: 220 ILKCLLSPGNKYLATASSDKTVKIWN-LDGFKLEKVLTGHERW 261
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECK 617
+++V++V F + SGS D ++K+W+ + EC+
Sbjct: 84 TKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQ 119
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 61 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 207
S + +RG LRGH+ + + D++LS S D+T+ +W+ D +
Sbjct: 313 SNYMAVRGALRGHDKAILSLFN---VSDLLLSGSADRTVRIWRRGPDSS 358
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 31.5 bits (68), Expect = 0.62
Identities = 23/86 (26%), Positives = 34/86 (39%)
Frame = +1
Query: 37 LFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYG 216
L+ P S S + L H G V + N K P+ + S + D T+ +W L N
Sbjct: 94 LWNPISSESGEIAHVRDLSKHKGPVRGLEFNVKSPNQLASGADDGTVCIWDLA----NPS 149
Query: 217 IPQKRLYGHSHFISDVVLSSDGNYAF 294
P L G ++ + S N F
Sbjct: 150 KPSHYLKGTGSYMQSEISSLSWNKGF 175
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 510 KSEDVLSVAFSVDNRQIVSGSRDKTIKLW 596
KSE V S F+ D R ++S +D T+KLW
Sbjct: 218 KSE-VTSAVFTKDQRFVLSSGKDSTVKLW 245
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 510 KSEDVLSVAFSVDNRQIVSGSRDKTIKLW 596
KSE V S F+ D R ++S +D T+KLW
Sbjct: 310 KSE-VTSAVFTKDQRFVLSSGKDSTVKLW 337
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 617
VL +A S D + IV+G+ D+T++ WN K
Sbjct: 431 VLYLATSPDGQTIVTGAGDETLRFWNVFPSVK 462
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 106 WVTQIATNPKYPDMILSSSRDKTLIVWKLTRD 201
W Q + N KY + SSS+D+T I+W+++ D
Sbjct: 278 WFLQFSHNGKY---LASSSKDQTAIIWEISAD 306
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +1
Query: 67 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHS 246
T KL L GH G V ++ +P M+ S+S D T+ +W L R N +K + G S
Sbjct: 520 TGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGLDR-INQQNQKKKLVQGSS 578
Query: 247 HFISDVVLSSDGN 285
+ V+ +GN
Sbjct: 579 S--NGVIHRCNGN 589
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 465 VFCAFARQKIVFVW*KSEDVL-SVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGH 641
V F R+ V + ED++ S + S DN+ I+ ++ I+LWN + K + GH
Sbjct: 426 VISLFDREATVERLIEEEDMITSFSLSNDNKYILVNLLNQEIRLWNIEGDPKIVSRYKGH 485
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLW 596
V +A S DN +V+GSRD T+ LW
Sbjct: 2671 VTCLALSPDNNFLVTGSRDSTVLLW 2695
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 61 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 192
S+ K T GH VT +A +P + +++ SRD T+++W++
Sbjct: 2655 SDGAKTLETAFGHCAPVTCLALSPDN-NFLVTGSRDSTVLLWRI 2697
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.1 bits (67), Expect = 0.82
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Frame = +1
Query: 91 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 270
+GH G + ++ + K +LSSS D+T+ +W++ DE R + H++F++ V
Sbjct: 319 KGHIGEILDLSWSEK--GYLLSSSVDETVRLWRVGCDE------CLRTFTHNNFVTCVAF 370
Query: 271 SS-DGNYAFFRFL-GQDFAFVGSRCR-QDYQTIR 363
+ D NY + G+ + +RCR DY IR
Sbjct: 371 NPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIR 404
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.1 bits (67), Expect = 0.82
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Frame = +1
Query: 91 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 270
+GH G + ++ + K +LSSS D+T+ +W++ DE R + H++F++ V
Sbjct: 319 KGHIGEILDLSWSEK--GYLLSSSVDETVRLWRVGCDE------CLRTFTHNNFVTCVAF 370
Query: 271 SS-DGNYAFFRFL-GQDFAFVGSRCR-QDYQTIR 363
+ D NY + G+ + +RCR DY IR
Sbjct: 371 NPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIR 404
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 85 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIP 222
T + H V Q NPK+ D+ S+S D TL +W + + IP
Sbjct: 144 TFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIP 189
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDH 370
+ SWD T++LW + + R F++H
Sbjct: 124 TSSWDDTVKLWAMDRPASVRTFKEH 148
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 189
K+ R H+ VT ++ +PK D +L+SS D T+ VWK
Sbjct: 261 KVLSKFRAHDLVVTSVSYHPK-EDCMLTSSVDGTIRVWK 298
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 537 FSVDNRQIVSGSRDKTIKLW--NTLAECKYTIQDDGHSDWGVMC 662
F V + SGS DKTIK+W NTL +C+ T++ + ++C
Sbjct: 318 FVVGGEVLYSGSVDKTIKVWDLNTL-QCRMTLKQHIGTVTSLLC 360
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 19 ASGXSLLFKPFSKMSETLKLRGTLRGHN-GWVTQIATNPKYPDMILSSSRDKTLIVWKL 192
+SG L++K S+ K +L GH+ G VT +++ S S DKT+ VW L
Sbjct: 284 SSGSILVWKATDSESDPFKYLTSLEGHHSGEVTCFVVGG---EVLYSGSVDKTIKVWDL 339
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 477 FARQKIVF-VW*KSEDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDW 650
F ++K F +W + S+A +D I SGS D ++++W+ + +C T++ HSDW
Sbjct: 244 FQKEKTEFRLWGHEGPITSLA--LDMTSIFSGSWDMSVRIWDRSSMKCVKTLR---HSDW 298
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLAAGKTTR 355
FSGSWD ++R+WD ++ K +
Sbjct: 271 FSGSWDMSVRIWDRSSMKCVK 291
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 540 SVDNRQIVSGSRDKTIKLWNTLAE 611
S N IV+GS+DKT++LWN ++
Sbjct: 413 SSGNVLIVTGSKDKTVRLWNATSK 436
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 82 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 192
G GHNG + +A K +S S D+TL VW L
Sbjct: 440 GVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSL 476
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTL-AECKYTI 626
V S+A S D + S RDK + LW+ CK T+
Sbjct: 195 VTSIALSEDGLTLFSAGRDKVVNLWDLHDYSCKATV 230
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +3
Query: 519 DVLSVAFSVDNRQI-VSGSRDKTIKLWN 599
D+L+VAF+ + VSGS D+T+K+W+
Sbjct: 448 DILAVAFAKKSFSFFVSGSGDRTLKVWS 475
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMCXILTQSCQ 686
+ SV FS ++ +++ S DKT+K+W +++ +GH+ + +T Q
Sbjct: 544 IFSVEFSTVDQCVMTASGDKTVKIW-AISDGSCLKTFEGHTSSVLRASFITDGTQ 597
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHT 373
+ S DKT+++W ++ G + FE HT
Sbjct: 558 TASGDKTVKIWAISDGSCLKTFEGHT 583
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDH 370
SG D +++WDL AGK F+ H
Sbjct: 253 SGGEDNVVKVWDLTAGKLLHEFKSH 277
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 537 FSVDNRQIVSGSRDKTIKLWNTLA 608
F+ D R IVSG D +K+W+ A
Sbjct: 244 FTPDGRWIVSGGEDNVVKVWDLTA 267
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWGV 656
VLSV S D I +GS D+T++LW+ + T+ + W V
Sbjct: 246 VLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSV 291
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 61 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 192
+E L G++ GH WV + +P I + S D+T+ +W L
Sbjct: 230 AEGKTLLGSMSGHTSWVLSVDASPD-GGAIATGSSDRTVRLWDL 272
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 617
VL +A S D + IV+G+ D+T++ WN K
Sbjct: 468 VLYLAVSPDGQTIVTGAGDETLRFWNVFPSPK 499
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 510 KSEDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
KSE V + +S DNR++ SG D + +WN
Sbjct: 335 KSE-VCGLKWSYDNRELASGGNDNRLFVWN 363
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 617
VL +A S D + IV+G+ D+T++ WN K
Sbjct: 425 VLYLAVSPDGQTIVTGAGDETLRFWNVFPSPK 456
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 510 KSEDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
KSE + + +S DNR++ SG D + +WN
Sbjct: 292 KSE-ICGLKWSSDNRELASGGNDNKLFVWN 320
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 692 LLYPXGWDRTVKVWHLTN 745
LLY WDRT+KVW + +
Sbjct: 220 LLYSASWDRTIKVWRIAD 237
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLAAGKTTRRFEDH 370
+S SWD+T+++W +A K H
Sbjct: 222 YSASWDRTIKVWRIADSKCLESIPAH 247
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 692 LLYPXGWDRTVKVWHL 739
LLY WDRTVKVW +
Sbjct: 149 LLYSASWDRTVKVWRI 164
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMC 662
+DVL +++S ++ ++S S DKT++LW+ K ++ HSD+ V C
Sbjct: 469 DDVLDLSWS-KSQHLLSSSMDKTVRLWD--LSSKTCLKVFSHSDY-VTC 513
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHT 373
S S DKT+RLWDL++ KT + H+
Sbjct: 484 SSSMDKTVRLWDLSS-KTCLKVFSHS 508
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLAAGKTT 352
++GS D+TLR+WD A+G+ T
Sbjct: 167 YTGSKDETLRVWDCASGQCT 186
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 531 VAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWGVMC 662
V V ++ SGS DKTIK+W+ +C T+ D ++C
Sbjct: 278 VTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLIC 322
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLAAGKTTRRFEDHTKV 379
+SGS DKT+++W L + + DH+ V
Sbjct: 288 YSGSMDKTIKVWSLDNLQCIQTLTDHSSV 316
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 64 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 186
E+ L L GH V+ IA P D + + S+D+TL VW
Sbjct: 139 ESFALLTQLDGHEKLVSGIAL-PSGSDKLYTGSKDETLRVW 178
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 692 LLYPXGWDRTVKVWHLTN 745
LLY WDRT+K+W T+
Sbjct: 179 LLYSVSWDRTLKIWRTTD 196
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 67 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIP 222
T+K + RGH VT +A +P + + +S S D ++ W + + IP
Sbjct: 341 TMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWIVGHENPQIEIP 392
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 519 DVLSVAFSVDNRQIVSGSRDKTIKLWNT 602
DV SV + +VSG +D+ +KLW+T
Sbjct: 270 DVKSVDWHPTKSLLVSGGKDQLVKLWDT 297
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 519 DVLSVAFSVDNRQIVSGSRDKTIKLWN 599
DV+ + +S D+ + SGS D T+ +WN
Sbjct: 120 DVVDLNWSPDDSMLASGSLDNTVHIWN 146
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 189
LRGH V + +P I S S DKT+I+W+
Sbjct: 156 LRGHLSLVKGVTWDP-IGSFIASQSDDKTVIIWR 188
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 76 LRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYG 240
LR RGH+ VT +A + ++ S S D + VWK++ E + G Q ++ G
Sbjct: 213 LRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVWKIS--EGSEGDEQSQITG 265
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHT 373
S S DKT+R WD+ GK ++ +H+
Sbjct: 113 SASPDKTVRAWDVETGKQIKKMAEHS 138
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 647
V ++ F+ I SGS D+ I LW +CK + GH +
Sbjct: 56 VYTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKN 97
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
+L + ++ D QIVS S DKT++ W+
Sbjct: 99 ILDLHWTSDGSQIVSASPDKTVRAWD 124
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLAAGKTTRRFEDH 370
F+G D +++WDL G+ T E H
Sbjct: 196 FTGGVDNDVKVWDLRKGEATMTLEGH 221
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLW 596
+ VL + FS D+ + SGS+D IK+W
Sbjct: 264 DPVLCIDFSRDSEMLASGSQDGKIKIW 290
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
SGS D +++W + G RRF+ H++
Sbjct: 280 SGSQDGKIKIWRIRTGVCIRRFDAHSQ 306
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 513 SEDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 608
S + ++ F+ D R +VSG D +K+W+ A
Sbjct: 142 SRGISTIRFTPDGRWVVSGGLDNVVKVWDLTA 173
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDH 370
SG D +++WDL AGK F+ H
Sbjct: 159 SGGLDNVVKVWDLTAGKLLHEFKFH 183
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 73 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 186
+LR TL+GH G V I+++ I+S S D ++IVW
Sbjct: 890 ELRATLKGHTGTVRAISSD---RGKIVSGSDDLSVIVW 924
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLA 608
+ ++ FS D R +VSG D +K+W+ A
Sbjct: 94 ISTIEFSPDGRWVVSGGLDNVVKVWDLTA 122
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDH 370
SG D +++WDL AGK F+ H
Sbjct: 108 SGGLDNVVKVWDLTAGKLLHEFKCH 132
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDH 370
SG D +++WDL AGK F+ H
Sbjct: 160 SGGEDNIVKVWDLTAGKLLTEFKSH 184
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 537 FSVDNRQIVSGSRDKTIKLWNTLA 608
F+ D R +VSG D +K+W+ A
Sbjct: 151 FTPDGRWVVSGGEDNIVKVWDLTA 174
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDH 370
SG D +++WDL AGK F+ H
Sbjct: 160 SGGEDNIVKVWDLTAGKLLTEFKSH 184
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 537 FSVDNRQIVSGSRDKTIKLWNTLA 608
F+ D R +VSG D +K+W+ A
Sbjct: 151 FTPDGRWVVSGGEDNIVKVWDLTA 174
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 647
V +V F+ +VSGS D+ I LWN L+ + GH +
Sbjct: 58 VNAVEFNSTGDVLVSGSDDRQIMLWNWLSGSRKLSYPSGHCE 99
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 DVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKY-TIQDDGHSDW 650
DVL + S D + +GSRD T+K W + + + + H DW
Sbjct: 42 DVLKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSATFESHVDW 86
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 DVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKY-TIQDDGHSDW 650
DVL + S D + +GSRD T+K W + + + + H DW
Sbjct: 42 DVLKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSATFESHVDW 86
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
+D+ S+ + D+ ++GS DKT KLW+
Sbjct: 194 KDITSLCKAADDSHFLTGSLDKTAKLWD 221
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
+D+ S+ + D+ ++GS DKT KLW+
Sbjct: 194 KDITSLCKAADDSHFLTGSLDKTAKLWD 221
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
+D+ S+ + D+ ++GS DKT KLW+
Sbjct: 194 KDITSLCKAADDSHFLTGSLDKTAKLWD 221
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHT 373
S S D TLRLWD+ R F HT
Sbjct: 565 SASTDSTLRLWDVKDNLPVRTFRGHT 590
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Frame = +1
Query: 88 LRGHNGWVTQIA------TNPKYPD--MILSSSRDKTLIVWKL 192
L+GH W+ + T + P+ M++SSS+DK + +WKL
Sbjct: 219 LKGHTDWIRSLDFSLPLHTTEEIPNSIMLVSSSQDKVIRIWKL 261
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 82 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISD 261
G LRGH + +A D++LS S DK+L VW+ E L GH+ +
Sbjct: 322 GALRGHRKAIMCLAVAS---DLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKS 378
Query: 262 VVLS---SDGN 285
+ +S SD N
Sbjct: 379 LAVSVSDSDSN 389
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 519 DVLSVAFSVDNRQIVSGSRDKTIKLW 596
+VL +++S DN ++S S DKT++LW
Sbjct: 330 EVLDISWSKDN-YLLSASMDKTVRLW 354
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 91 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 192
RGH G V I+ + + +LS+S DKT+ +WK+
Sbjct: 325 RGHTGEVLDISWSKD--NYLLSASMDKTVRLWKV 356
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 61 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT-----RDENNYGIPQ 225
S L+L +L H V + + Y MI SSS D T+I+W L+ R N+ +P
Sbjct: 3311 SRRLRLEKSLCAHTAKVICLRVSQPYM-MIASSSDDCTVIIWDLSSLSFVRQLPNFSVPV 3369
Query: 226 KRLY 237
+Y
Sbjct: 3370 TVVY 3373
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 519 DVLS-VAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 647
D +S +A S D R + SGS DKT K+W +++ + + H D
Sbjct: 212 DAISCLALSEDKRLLYSGSWDKTFKVWR-VSDLRCVESVNAHED 254
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 293 FSGSWDKTLRLW---DLAAGKTTRRFED 367
+SGSWDKT ++W DL ++ ED
Sbjct: 227 YSGSWDKTFKVWRVSDLRCVESVNAHED 254
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 692 LLYPXGWDRTVKVWHLTN 745
LLY WD+T KVW +++
Sbjct: 225 LLYSGSWDKTFKVWRVSD 242
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 293 FSGSWDKTLRLWDLA 337
+SGSWD T+RLW L+
Sbjct: 641 YSGSWDGTVRLWSLS 655
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Frame = +2
Query: 269 CLVTVITP-----FSGSWDKTLRLWDLAAGK 346
C+ +V+ P +S SWD ++R WD+ GK
Sbjct: 274 CVSSVVWPEHDVIYSSSWDHSVRRWDVETGK 304
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Frame = +2
Query: 269 CLVTVITP-----FSGSWDKTLRLWDLAAGK 346
C+ +V+ P +S SWD ++R WD+ GK
Sbjct: 274 CVSSVVWPEHDVIYSSSWDHSVRRWDVETGK 304
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 88 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 195
L HN +VT + NP D +S S D + +W ++
Sbjct: 555 LFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNIS 590
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMC 662
+DVL +++S ++ ++S S DKT++LW+ E + ++ H+D+ V C
Sbjct: 520 DDVLDLSWS-RSQLLLSSSMDKTVRLWD--IETQSCLKLFAHNDY-VTC 564
>At4g24120.1 68417.m03462 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 665
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 199 DENNYGIPQKRLYGHSHFISDVVLSSDGNYAFFRFLGQDFAFVGSRCR 342
DE+N K +YG+ F+S ++ DG Y F + L A V +R +
Sbjct: 308 DEHN----MKSIYGYKVFLSVALILGDGLYTFVKILFVTIANVNARLK 351
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDHTK 376
S S DK +++WD+A G E HTK
Sbjct: 283 SASADKKVKVWDVATGTCKITMEHHTK 309
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
E + S+ + D+ ++GS DKT KLW+
Sbjct: 221 EAITSLCKAADDSHFLTGSHDKTAKLWD 248
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 489 KIVFVW*KSEDVLSVAFS-VDNRQIVSGSRDKTIKLWNT 602
KIV + E V V FS VD+ + + S D+T K+W T
Sbjct: 98 KIVVLKGHKEHVTDVVFSSVDDECLATASTDRTEKIWKT 136
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRR 358
+GSWDKT++ WD T R
Sbjct: 114 TGSWDKTIKCWDPRGASGTER 134
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
V V +S Q+++GS DKTIK W+
Sbjct: 100 VRCVEYSYAAGQVITGSWDKTIKCWD 125
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 522 VLSVAFSV---DNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 647
V VAFS+ R ++SG DKT+K+W+ +C ++ +SD
Sbjct: 251 VSCVAFSLFQEKGRFLISGGNDKTVKIWDCF-KCLDPNNNNNNSD 294
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 522 VLSVAFSV---DNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 647
V VAFS+ R ++SG DKT+K+W+ +C ++ +SD
Sbjct: 277 VSCVAFSLFQEKGRFLISGGNDKTVKIWDCF-KCLDPNNNNNNSD 320
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 522 VLSVAFS-VDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMCXILTQSC-QPHY 695
V SV F+ VD+ +SGS D +++W+ ++C+ DW I+T C QP
Sbjct: 399 VTSVQFNPVDDDHFISGSIDGKVRIWSA-SQCQVV-------DWADARGIVTAVCYQPDG 450
Query: 696 CILXVGT 716
+ +GT
Sbjct: 451 QAVIIGT 457
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 97 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 198
HN +VT + NP D +S S D + +W ++
Sbjct: 395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQ 428
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 522 VLSVAFS-VDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMCXILTQSC-QPHY 695
V SV F+ VD+ +SGS D +++W+ ++C+ DW I+T C QP
Sbjct: 399 VTSVQFNPVDDDHFISGSIDGKVRIWSA-SQCQVV-------DWADARGIVTAVCYQPDG 450
Query: 696 CILXVGT 716
+ +GT
Sbjct: 451 QAVIIGT 457
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 97 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 198
HN +VT + NP D +S S D + +W ++
Sbjct: 395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQ 428
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGH 641
V + F ++ SGS D+T+K+WN + + + ++ GH
Sbjct: 267 VSCLCFRYGTSELYSGSFDRTVKVWN-VEDKAFITENHGH 305
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 531 VAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDD 635
+ FS ++ QI++ S+D +I++WN +Y + +D
Sbjct: 295 LCFSPNSEQIITASKDGSIRVWN--INVRYHLDED 327
>At5g60050.1 68418.m07530 PRLI-interacting factor-related contains
weak similarity to PRLI-interacting factor G
(GI:11139264) [Arabidopsis thaliana]
Length = 499
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 163 RDKTLIVWKLTRDENNYGIPQKRLYGHSH 249
R+ ++++KL R+E +Y + + LYG H
Sbjct: 271 REMKVLIFKLVREEADYDVSRDTLYGLCH 299
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 611
VL +A S D + S + D+T++LWN E
Sbjct: 375 VLFMAQSPDGCTVASAAGDETLRLWNVFGE 404
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 611
VL +A S D + S + D+T++LWN E
Sbjct: 358 VLFMAQSPDGCTVASAAGDETLRLWNVFGE 387
>At5g14050.1 68418.m01644 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to unknown protein (ref|NP_057085.1)
Length = 546
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWGVMCXIL 671
V S+AFS D + ++S D + +W+ +C Y D+G + +C L
Sbjct: 377 VRSLAFSEDGKHLLSSGGDGQVYVWDLRTMKCLYKGVDEGSTCGTSLCSSL 427
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 692 LLYPXGWDRTVKVWHLTN 745
LLY WD T+KVW + +
Sbjct: 249 LLYSSSWDTTIKVWRIAD 266
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWNTL 605
V + FS D+ +VSGS+D +I++W+ +
Sbjct: 123 VTCLVFSGDDSLLVSGSQDGSIRVWSLI 150
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 516 EDVLSVAFSVDNRQIVSGSRDKTIKLWN 599
E +S +D+ IVS S D ++KLWN
Sbjct: 894 EKAVSYVKFMDSETIVSASTDNSLKLWN 921
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2
Query: 296 SGSWDKTLRLWD 331
+GSWDKTL+ WD
Sbjct: 131 TGSWDKTLKYWD 142
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 85 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDV 264
T GH G + +A +P ++ + D +WK+ + +P GH +S +
Sbjct: 65 TFTGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELP-----GHKDSVSCL 119
Query: 265 VLSSDG 282
S DG
Sbjct: 120 AFSYDG 125
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 DKTLRLWDLAAGKTTRRFEDH 370
DKT+++WD A G FE H
Sbjct: 485 DKTIKVWDAATGVKRHTFEGH 505
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 DKTLRLWDLAAGKTTRRFEDH 370
DKT+++WD A G FE H
Sbjct: 485 DKTIKVWDAATGVKRHTFEGH 505
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 85 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 198
T H V Q+ NPK ++ S + L+VW L+R
Sbjct: 312 TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAGKTTRRFEDH 370
SGS D T+R+WDL +G H
Sbjct: 554 SGSMDCTIRIWDLESGNVIMIMHHH 578
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 525 LSVAFSVDNRQIVSGSRDKTIKLWN 599
+S A +DN +V+ S D T+KLW+
Sbjct: 885 VSYAKFLDNETLVTASTDNTLKLWD 909
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 37 LFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 204
L KP S+ S L+G+ G ++ I+ N K ++ S+S + T ++W L + +
Sbjct: 152 LLKP-SEPSHFPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQK 206
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 37 LFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 204
L KP S+ S L+G+ G ++ I+ N K ++ S+S + T ++W L + +
Sbjct: 152 LLKP-SEPSHFPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQK 206
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 522 VLSVAFSVDNRQIVSGSRDKTIKLWN 599
+ +V++S D +Q+++ S DK+ K+W+
Sbjct: 235 IYAVSWSPDGKQVLTVSADKSAKIWD 260
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 61 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 186
S T+ RG GH V +A +P S D LI+W
Sbjct: 279 SPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILW 320
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 525 LSVAFSVDNRQIVSGSRDKTIKLWN 599
LSV +S D ++I SGS D I+ W+
Sbjct: 202 LSVTWSADAQRIFSGSSDGLIRCWD 226
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 296 SGSWDKTLRLWDLAAG 343
SGS D T+RLWD+ +G
Sbjct: 224 SGSGDSTVRLWDITSG 239
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,977
Number of Sequences: 28952
Number of extensions: 361712
Number of successful extensions: 1861
Number of sequences better than 10.0: 138
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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