Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0859
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    37   0.004
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   2.2  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   3.8  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   6.6  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 25/77 (32%), Positives = 34/77 (44%)
 Frame = +2

Query: 212 TAPFTTLMASTLRPWRTTESRTVR*SVSPALRPTKARTCFTRSATFLYPPPSNRS*TRTT 391
           T  FTT +A+T+ P     +     S S A   T   +  + + T + PPPS  S   TT
Sbjct: 23  TPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPST-SHNSTT 81

Query: 392 LTGSKLRSLRRPPTVPP 442
            T     S+    TVPP
Sbjct: 82  TTVPPTTSMNTTTTVPP 98


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 349 LVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILI 468
           L+PA I +V +K NA R  A   ++A    TTP A K ++
Sbjct: 96  LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVKAIV 135


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 285 YRTVLDSVVLQGLRVDAIRVVNGAVVLDNSDASG 184
           +++++      GLR+DA++++N     D  DA+G
Sbjct: 214 FKSLISKYDFDGLRIDAVKMMNYTFFPDFVDATG 247


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 47  GXNFINEANYMXHDRYNPRLGWQ 115
           G NF+ ++ ++  + YNPR G +
Sbjct: 704 GVNFVIDSGFVKQNMYNPRTGME 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,285
Number of Sequences: 5004
Number of extensions: 49867
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)