Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0859
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 268 3e-72
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 77 2e-14
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 77 2e-14
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 32 0.43
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08) 30 2.3
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_37127| Best HMM Match : DUF352 (HMM E-Value=3.3) 29 3.0
SB_44202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46) 28 7.0
SB_55632| Best HMM Match : Vicilin_N (HMM E-Value=8.1) 28 7.0
SB_9915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_50605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 28 9.3
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 9.3
SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05) 28 9.3
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 268 bits (657), Expect = 3e-72
Identities = 129/186 (69%), Positives = 151/186 (81%), Gaps = 12/186 (6%)
Frame = +1
Query: 130 QGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFPGAKA 309
+GFGNVGLH+CRYL RAGA CIGVIE DGS++NPDGI+PK LEDY++E GT+ +PGAK
Sbjct: 258 RGFGNVGLHSCRYLHRAGAKCIGVIERDGSLWNPDGIDPKELEDYKLEKGTITNYPGAKM 317
Query: 310 YEGENMLYEKCDILVPAAIEQVINKDNAHRIQAK------------IIAEAANGPTTPAA 453
E EN+L +CDIL+PAA E+ I K NAHRI+AK IIAE ANGPTTP A
Sbjct: 318 VE-ENLLEAECDILIPAANEKQITKKNAHRIKAKEKGTITNYPGAKIIAEGANGPTTPEA 376
Query: 454 DKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYHLLESVQES 633
D+ILI LVIPDLY+NAGGVTVS+FEWLKN+NHVS+GRLT+KYE+ESNYHLLESVQ+S
Sbjct: 377 DQILIANKQLVIPDLYLNAGGVTVSYFEWLKNINHVSFGRLTWKYEKESNYHLLESVQKS 436
Query: 634 LERRFG 651
LER FG
Sbjct: 437 LERHFG 442
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 693 FXXKIXGASEKDIVHSGLD 749
F +I GASE+DIVHSGL+
Sbjct: 455 FQEQISGASERDIVHSGLE 473
>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 448
Score = 76.6 bits (180), Expect = 2e-14
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Frame = +1
Query: 127 VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDY----RIENGTVVGF 294
V G GNV + + G + + + G++Y+PDGI + L ++ G + +
Sbjct: 236 VSGSGNVAQFATEKVTQLGGKVVSLSDSSGTVYDPDGITKEKLAFITNLKNVKRGRISEY 295
Query: 295 P---GAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAK---IIAEAANGPTTPAAD 456
G + +EG+ + KCD+ +P A + +NK++A + A +AE AN P+ P+A
Sbjct: 296 ATKYGVEFHEGKRPWFLKCDVALPCATQNEVNKEDAEMLVANGCFCVAEGANMPSEPSAI 355
Query: 457 KILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGR 573
++ IL P NAGGV VS E +N S+ R
Sbjct: 356 EVFQKAKILYGPGKASNAGGVAVSGLEMSQNSLRSSWSR 394
>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 486
Score = 76.6 bits (180), Expect = 2e-14
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Frame = +1
Query: 127 VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDY----RIENGTVVGF 294
V G GNV + + G + + + G++Y+PDGI + L ++ G + +
Sbjct: 274 VSGSGNVAQFATEKVTQLGGKVVSLSDSSGTVYDPDGITKEKLAFITNLKNVKRGRISEY 333
Query: 295 P---GAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAK---IIAEAANGPTTPAAD 456
G + +EG+ + KCD+ +P A + +NK++A + A +AE AN P+ P+A
Sbjct: 334 ATKYGVEFHEGKRPWFLKCDVALPCATQNEVNKEDAEMLVANGCFCVAEGANMPSEPSAI 393
Query: 457 KILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGR 573
++ IL P NAGGV VS E +N S+ R
Sbjct: 394 EVFQKAKILYGPGKASNAGGVAVSGLEMSQNSLRSSWSR 432
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 68.9 bits (161), Expect = 4e-12
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Frame = +1
Query: 127 VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKAL----EDYRIENGTVVGF 294
+ G GNV + + G + + + +G++Y+P GI+ L E ++ G + +
Sbjct: 563 ISGSGNVAQYALEKTLELGGKVVTLSDSNGTVYDPSGIDSAKLAFVMELKNVKRGRIKEY 622
Query: 295 P---GAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRI---QAKIIAEAANGPTTPAAD 456
G + + G+ + KCD+ +P A + IN+ +A + + E AN PT P A
Sbjct: 623 ADKYGVEYHAGKRPWFVKCDVALPCATQNEINQSDAETLVKNGCMCVGEGANMPTEPEAI 682
Query: 457 KILIDRNILVIPDLYINAGGVTVSFFEWLKN 549
K+ +L P NAGGV VS E +N
Sbjct: 683 KVFQKARVLYAPGKASNAGGVAVSGLEMSQN 713
>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 361
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 230 LMASTLRPWRTTESRTVR*SVSPALRPTKARTCFTRSATFLYPPPSNRS*TRTT 391
L S+LR +T T +PA RPT T T ++T PPS + TR T
Sbjct: 8 LFGSSLRSNKTPSKATSPKPTAPATRPTSTSTKPTTASTKPTSPPSQAARTRNT 61
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 357 RRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPHRSQHSRDPRPLHQR 509
RR ++ +RS+ PS H RSH + R R +HSR P H+R
Sbjct: 234 RRRSRSPRRRRRSRSPSPHH-----RSHRSRSRSRSPRRRHSRSRSPTHRR 279
>SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08)
Length = 256
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 177 ADEVAASVESHVTETLDDE--RXCHPNRGLY 91
ADE+ AS ESH +DDE R H N+ LY
Sbjct: 78 ADEMEASGESHFPVKIDDEWCRIIHSNQQLY 108
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +3
Query: 357 RRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPHRSQHSRDPRPLHQR 509
RRHR H++ R + RQR H Q HR QH R R HQR
Sbjct: 159 RRHRQKHQRRNRQKHQR------RQRQEH----QRRHRRQHQRRHRQKHQR 199
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +3
Query: 333 REVRHSCTRRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPHRSQHSRDPRPLHQR 509
R R RR+R H++ QR + H +R H RQ R QH R R Q+
Sbjct: 159 RRHRQKHQRRNRQKHQRRQRQE-----HQRRHRRQHQRRHRQKHQRRQHQRRERQKQQQ 212
>SB_37127| Best HMM Match : DUF352 (HMM E-Value=3.3)
Length = 256
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 351 CTRRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPHRS 473
C +++RT H Q S S + C + R+ HT + H S
Sbjct: 162 CAQQYRTVHTTVQNSAHNSTEQCAQQYRTVHTTVQNSAHNS 202
>SB_44202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 304 KAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADK 459
K + +++ C+ +VP++IE V K N + A+ A +GP P A +
Sbjct: 176 KLLKNRDVVQFLCNPMVPSSIENVNRKTNFNSQVAEPSEAAPHGPAPPLAGR 227
>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
Length = 1232
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 339 VRHSCTRRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPHRSQHSRDPRPLHQR 509
VR + + R+ H++ S H G++ H R HS RPLHQR
Sbjct: 792 VRKAHSSGKRSLHQRKTPSSGVRKAHSSGKRSLHQRKTLSSGVRKAHSSGKRPLHQR 848
>SB_55632| Best HMM Match : Vicilin_N (HMM E-Value=8.1)
Length = 148
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 351 CTRRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPHRS--QHSRDPRPLH 503
C +++RT H Q S S + C + R+ T + H S Q+ + R +H
Sbjct: 41 CAQQYRTVHTTVQNSTHNSTEQCAQQYRTVRTTVQNSAHNSTEQYPQQHRTVH 93
>SB_9915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 239 STLRPWRTTESRTVR*SVSPALRPTKARTCFTRSATFLYPPPS-NRS*TRTTLTGSKLRS 415
STLR T + R SP+ R + R+ R F PP S + TRT T S +
Sbjct: 2 STLRQETDTGKKLARRRSSPSRRHKRNRSLKNRDEVFATPPSSVTLAFTRTRGTPSSSK- 60
Query: 416 LRRPPTV 436
LR+ P +
Sbjct: 61 LRKTPVL 67
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +3
Query: 342 RHSCTRRHRTGH--KQGQRSQDPS*DHCGGR------QRSHHTCCRQDPHRSQHSRDPRP 497
RH +R R+ H +Q +RS+ + H R +RS H R + R + SR
Sbjct: 18 RHETSRHERSRHETRQHERSRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETR 77
Query: 498 LHQR 509
H+R
Sbjct: 78 QHER 81
>SB_50605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -1
Query: 276 VLDSV--VLQGLRVDAIR-VVNGAVVLDNSDASGAGADEVAASVESHVTETLDDE 121
VLDSV V + L V + V+N V+LD AS D V+ + +DD+
Sbjct: 142 VLDSVTSVAESLPVISFDDVINNVVILDKVKASSKNVDGGETDVDGENADVVDDD 196
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 348 SCTRRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPHRS-QHSRD 488
S +R H + +S+DP D +R + +D HR +HSRD
Sbjct: 259 SRSRDHSSRRNSRDKSRDPDRDRPRDSERDRYRDIERDRHRDRRHSRD 306
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 305 RPTKARTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRR 424
R + ++ F++S++ PPP N + ++TT +K RS+ R
Sbjct: 538 RTSSCKSIFSKSSSSATPPPGNNARSKTT-ESNKNRSVAR 576
>SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
Length = 1482
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 549 VLEPLEE*DGDTTSVDVEVGDHENVAIDEDLV 454
+L+ +++ DGDT DV+V D + + D D+V
Sbjct: 848 LLDDVDDVDGDTLLDDVDVVDEDTLLADVDVV 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,780,225
Number of Sequences: 59808
Number of extensions: 431622
Number of successful extensions: 1456
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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