Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0859
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...   145   2e-35
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...   145   3e-35
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...   142   2e-34
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil...    55   6e-08
At1g71690.1 68414.m08273 expressed protein contains Pfam profile...    30   1.9  
At1g71470.1 68414.m08259 hypothetical protein                          29   3.3  
At1g03990.1 68414.m00385 alcohol oxidase-related low similarity ...    29   3.3  
At3g63100.1 68416.m07087 glycine-rich protein                          28   7.6  
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain...    28   7.6  

>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score =  145 bits (352), Expect = 2e-35
 Identities = 68/144 (47%), Positives = 98/144 (68%)
 Frame = +1

Query: 121 FIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFPG 300
           F++QGFGNVG    + +   G   + V +  G+I N DGI+  AL  +  E+  V GF G
Sbjct: 209 FVIQGFGNVGSWAAKLISEKGGKIVAVSDITGAIKNKDGIDIPALLKHTKEHRGVKGFDG 268

Query: 301 AKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILIDRNI 480
           A   +  ++L E CDILVPAA+  VIN++NA+ I+AK I EAAN PT P AD+IL  + +
Sbjct: 269 ADPIDPNSILVEDCDILVPAALGGVINRENANEIKAKFIIEAANHPTDPDADEILSKKGV 328

Query: 481 LVIPDLYINAGGVTVSFFEWLKNL 552
           +++PD+Y N+GGVTVS+FEW++N+
Sbjct: 329 VILPDIYANSGGVTVSYFEWVQNI 352


>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score =  145 bits (351), Expect = 3e-35
 Identities = 63/145 (43%), Positives = 97/145 (66%)
 Frame = +1

Query: 118 TFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFP 297
           TF++QGFGNVG    + +   G   + V +  G+I NP+GI+  AL  ++   G++  F 
Sbjct: 208 TFVIQGFGNVGTWAAKLIHEKGGKVVAVSDITGAIRNPEGIDINALIKHKDATGSLNDFN 267

Query: 298 GAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILIDRN 477
           G  A   + +L  +CD+L+P A+  V+NK+NA  ++AK I EAAN PT P AD+IL  + 
Sbjct: 268 GGDAMNSDELLIHECDVLIPCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEILSKKG 327

Query: 478 ILVIPDLYINAGGVTVSFFEWLKNL 552
           ++++PD+Y NAGGVTVS+FEW++N+
Sbjct: 328 VIILPDIYANAGGVTVSYFEWVQNI 352


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score =  142 bits (344), Expect = 2e-34
 Identities = 65/144 (45%), Positives = 99/144 (68%)
 Frame = +1

Query: 121 FIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFPG 300
           F +QGFGNVG    + +   G   + V +  G+I N +GI+  +L ++  EN  + GF G
Sbjct: 209 FAIQGFGNVGSWAAKLISDKGGKIVAVSDVTGAIKNNNGIDILSLLEHAEENRGIKGFDG 268

Query: 301 AKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILIDRNI 480
           A + + +++L E CDILVPAA+  VIN++NA+ I+AK I E AN PT P AD+IL  + +
Sbjct: 269 ADSIDPDSILVEDCDILVPAALGGVINRENANEIKAKFIIEGANHPTDPEADEILKKKGV 328

Query: 481 LVIPDLYINAGGVTVSFFEWLKNL 552
           +++PD+Y N+GGVTVS+FEW++N+
Sbjct: 329 MILPDIYANSGGVTVSYFEWVQNI 352


>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
           to NADP-specific glutatamate dehydrogenase (NADP-GDH)
           SP:P28724 [Giardia lamblia (Giardia intestinalis)]
          Length = 637

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
 Frame = +1

Query: 124 IVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKAL---EDYRIENGTVVGF 294
           +V G G + +H    L+  GA  + V +  G + + DG +   L    D + +  ++  +
Sbjct: 421 VVSGCGKIAMHVVEKLIACGAHPVTVSDSKGYLVDDDGFDYMKLAFLRDIKSQQRSLRDY 480

Query: 295 PG----AKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQ---AKIIAEAANGPTTPAA 453
                 AK ++      E+CD+  P A +  +++ +A  +     +++ E +N P T  A
Sbjct: 481 SKTYARAKYFDELKPWNERCDVAFPCASQNEVDQADAINLVNAGCRLLVEGSNMPCTAEA 540

Query: 454 DKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFK 585
             +    N+L+ P +   AGGV     E L+  N + +    F+
Sbjct: 541 VDVFRKANVLIAPAIAAGAGGVAAGEIEVLRESNSMQWSAEDFE 584


>At1g71690.1 68414.m08273 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 295

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +2

Query: 320 RTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRRPPTVPPHL 448
           RT F+ S++F + P +N     T+ TGSKL+S R    +PP L
Sbjct: 31  RTGFSPSSSF-HQPLNNTLRISTSSTGSKLQSPRSCNKIPPSL 72


>At1g71470.1 68414.m08259 hypothetical protein
          Length = 131

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 256 EDYRIENGTVVGFPGAKAYEGENMLYEKCDILVPAAIEQVINK 384
           E+Y +E G ++G   AK       L EKC++L    IE +INK
Sbjct: 82  EEYILEKGKLIGDNKAKE------LNEKCEVLFIKEIEHLINK 118


>At1g03990.1 68414.m00385 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]; Location
           of EST 248L9T7, gb|AA713296
          Length = 758

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 145 VGL-HTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDY 264
           +GL    R LV AGA  +G    DG     DGI  K LE +
Sbjct: 625 IGLKQALRILVAAGAAEVGTYRSDGQRMKCDGIKQKDLEAF 665


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = +3

Query: 345 HSCTRRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPHRSQHSR 485
           H   R H  GH  G R      DH  GR R HH       HR  H R
Sbjct: 92  HGHGRGHGHGHGHGHRRHGR--DHRHGRDRGHHRGHGHHHHRG-HRR 135


>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  Pfam profile PF00564: PB1
           domain
          Length = 720

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 356 PPPSNRS*TRTTLTGSKLRSLRRPPTVPPHL 448
           PPPS+ S T    T     +   PP +PPH+
Sbjct: 3   PPPSSLSSTAVASTSISAATAPVPPPLPPHV 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,941,457
Number of Sequences: 28952
Number of extensions: 294802
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)