Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0858
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   3.4  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 571 VKIFFKIHSKK*EEYY*KLXECHFLNSI*FPKKMF 675
           V IFF   +KK E++  +  + HF  ++    ++F
Sbjct: 68  VTIFFNFATKKLEQFIVRFMKYHFFGTLKLWSQLF 102


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 181 RRNTDRNA*NLSNSTFYNYLTSHY 252
           RRN  + A  + N  FY++L++ Y
Sbjct: 234 RRNFSKQASEILNEYFYSHLSNPY 257


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 LLVKRFXSLEGNYSLKNFRRTSVCKN 578
           +LVK F +++          TS+CKN
Sbjct: 503 MLVKSFDAIDSKLQTGGKVETSICKN 528


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 647 IQYNFLKKCFGINII 691
           + YNF KKC+ + ++
Sbjct: 47  LNYNFTKKCYFLRMV 61


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 208  NLSNSTFYNYLTSHYLH 258
            N +  TF+N L   YLH
Sbjct: 1189 NRNEETFWNELIEQYLH 1205


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 208  NLSNSTFYNYLTSHYLH 258
            N +  TF+N L   YLH
Sbjct: 1189 NRNEETFWNELIEQYLH 1205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,329
Number of Sequences: 336
Number of extensions: 2728
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)