Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0858
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875...    29   3.0  
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33...    29   3.9  

>09_04_0155 -
           15185985-15186755,15187049-15187236,15187479-15187517,
           15187741-15187768
          Length = 341

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -2

Query: 278 ITLSLLMCK*CDVK*L*KVEFERFHAFLSVFRLNIKDWNNE-TCPVKPYKIFTG*IIKKC 102
           ++L L  CK C VK      FER  A+    + ++K  N + +C +   K+       +C
Sbjct: 264 LSLELYSCKVCSVK----CTFERMLAYHLTGKKHLKQENLQLSCEI--CKL-------QC 310

Query: 101 NSDKILTLYLYSERHRCRV 45
           NS+K+L+ + Y ++H+ ++
Sbjct: 311 NSEKVLSDHRYGKKHQAKL 329


>05_01_0048 +
           331155-333077,333208-333354,333540-334087,334481-334616
          Length = 917

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 121 PVNILYGLTGHVSLFQSLMLRRNTDRNA*NLSNSTFYNYLTSHYLHINKLSVILRALGH 297
           PV++  G+  H++++ S+ +         N SN+   N  +   LH N +S   R LG+
Sbjct: 712 PVHVPNGIDSHIAIYSSINVAHQPQNELLNASNAQSLN--SGRSLHPNGISSQHRLLGN 768


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,392
Number of Sequences: 37544
Number of extensions: 227158
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)