Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0856
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       79   5e-15
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   4e-11
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     29   4.0  
SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)                     29   4.0  
SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)                   28   7.0  
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)                  28   9.3  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
 Frame = +3

Query: 153 GKVVMVYYEGRLKQNNKMFDNCL-KGPGFKFRLGAKEVISGWDVGVSGMKVGGKRKIICP 329
           G  + ++Y GRL   NK FD+ L +G  F F LG   VI GW+ G+  M +G KRK+  P
Sbjct: 45  GDTLSMHYTGRLANGNK-FDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIP 103

Query: 330 PGMAYGAKGSPPVIPPNSTLVFEVELKNVK 419
           P +AYG  G+   IPP++TL  +VEL  ++
Sbjct: 104 PHLAYGENGAGAAIPPHATLYMDVELVEIQ 133


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
 Frame = +3

Query: 147 KPGKVVMVYYEGRLKQNNKMFDNCL---KG-PGFKFRLGAKEVISGWDVGVSGMKVGGKR 314
           K G  V+V+Y G + Q+  +FD      KG   F+F +G   VI G++ GV+GM VG KR
Sbjct: 116 KVGDHVVVHYTGWM-QDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQGVTGMCVGQKR 174

Query: 315 KIICPPGMAYGAKGSPPVIP----PNSTLVFEVELKNVK 419
           KI+ PP +AYG KGS  V       N+TL + +EL +V+
Sbjct: 175 KIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVR 213


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/78 (23%), Positives = 37/78 (47%)
 Frame = -3

Query: 490 KHTCFIHTMAIK*SNYLLLKTSVHLTFFNSTSNTKVELGGITGGEPFAPYAMPGGQIIFL 311
           K+T F  +  +  S   L  ++V L+   + S   ++   I    P    ++P    + +
Sbjct: 462 KNTTFTPSEIVSPSISTLHTSTVELSSTGNVSMLTLKTNSIPVTSPAPSTSLPASSTLPV 521

Query: 310 LPPTFIPETPTSQPLMTS 257
           LP + + ETP++Q + +S
Sbjct: 522 LPTSSLAETPSTQSVASS 539


>SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 264 ISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVF 395
           +  + + +    V  + +++ PP + YG K S P+ P  +T V+
Sbjct: 74  VKDFSISIGKNMVELQGRVLPPPKLVYGGKQSSPITPKGATDVY 117


>SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 78  KEKKALSGGVQIEDLKLGNGPVAKPG---KVVMVYYEGRLKQNNKMFDNCLKGPGFKFRL 248
           KE++ +   +Q+  ++L  G + K G    + ++  + R++++  +   CL   G +  +
Sbjct: 179 KERRGVQS-IQVSAVRLHRGFLTKDGWGNDIALIQLKKRVRRSRLVRPICLPRVGQEVEI 237

Query: 249 GAKEVISGW 275
           G K  ++GW
Sbjct: 238 GTKCYMTGW 246


>SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)
          Length = 355

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 322 IIFLLPPTFIPETPTSQPLMTSFAPRRNLNPGPLRQLSN 206
           ++F L   + PE P + P ++S  PR +  PG    ++N
Sbjct: 123 VLFFLVWIYFPEKPPTPPSISSSKPRLDFIPGAKTLMTN 161


>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
          Length = 288

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 69  IEKKEKKALSGGVQIEDLKLGNGPVAKPGKV 161
           IEK+ K  LSGG  +  L+  +G   KPG+V
Sbjct: 59  IEKEMKALLSGGATVPWLRGRDGRDGKPGRV 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,975,537
Number of Sequences: 59808
Number of extensions: 434616
Number of successful extensions: 1126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)