Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0850
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Conta... 44 1e-04
At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Inter... 41 8e-04
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 40 0.002
At2g39760.1 68415.m04882 speckle-type POZ protein-related contai... 38 0.005
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 36 0.022
At3g61600.2 68416.m06901 BTB/POZ domain-containing protein conta... 36 0.022
At3g61600.1 68416.m06900 BTB/POZ domain-containing protein conta... 36 0.022
At2g30520.1 68415.m03717 signal transducer of phototropic respon... 36 0.022
At1g04390.1 68414.m00429 expressed protein 36 0.029
At2g46260.1 68415.m05752 BTB/POZ domain-containing protein conta... 35 0.066
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr... 34 0.088
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 34 0.12
At4g01160.1 68417.m00154 BTB/POZ domain-containing protein conta... 33 0.15
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr... 33 0.27
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 32 0.35
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 32 0.35
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai... 32 0.35
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 31 0.62
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 31 0.82
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 31 0.82
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ... 31 0.82
At5g13600.1 68418.m01574 phototropic-responsive NPH3 family prot... 31 1.1
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 31 1.1
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 31 1.1
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 30 1.4
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 30 1.4
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ... 29 3.3
At1g30440.1 68414.m03719 phototropic-responsive NPH3 family prot... 29 4.4
At5g03250.1 68418.m00274 phototropic-responsive NPH3 family prot... 28 7.6
At2g37720.1 68415.m04625 expressed protein 28 7.6
>At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Contains
similarity to gb|AJ000644 SPOP (speckle-type POZ
protein) from Homo sapiens and contains a PF|00651
BTB/POZ domain. ESTs gb|T75841, gb|R89974, gb|R30221,
gb|N96386, gb|T76457, gb|AI100013 and gb|T76456 come
from this gene;supported by full-length
Length = 326
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +3
Query: 426 MKMMFTMRSHQMLTDVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKECEMSRVRLQGR 605
+K + M +LTDV++ + HK +L+A S FK+MF L E E S + +
Sbjct: 148 LKCLSRMLEESILTDVIIHTADGTLSAHKAILSASSTVFKSMFHHDLMEKESSTIHIDD- 206
Query: 606 VSFSDGLADILYVHG 650
+S +A + Y++G
Sbjct: 207 MSRESCMALLSYLYG 221
>At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 329
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 444 MRSHQMLTDVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKECEMSRVRL 596
M + + TD+ + + H+ VLAA SP F++MF LKE E+S + +
Sbjct: 157 MLTESIYTDITINASDGSIGAHRAVLAARSPVFRSMFLHDLKEKELSEINV 207
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 417 SEFMKMMFTMRSHQMLTDVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKE 572
S F K++ T++ +DV +V E F HK+VLAA S +F++MF + L E
Sbjct: 193 SHFGKLLDTLQG----SDVTFDVAGEKFQAHKLVLAARSQFFRSMFYNTLAE 240
>At2g39760.1 68415.m04882 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 408
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 468 DVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKECEMSRV 590
D+ +VG+E + HK++LAA SP F+A F + + R+
Sbjct: 195 DIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRI 235
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 465 TDVVLEVGNELFHVHKVVLAAGSPYFKAMFTS 560
+D+ + E F HK+VLAA SP+FK+ F S
Sbjct: 198 SDITFNIAGEKFLAHKLVLAARSPFFKSKFFS 229
>At3g61600.2 68416.m06901 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 501 HVHKVVLAAGSPYFKAMFTSGLKECEMSRVRLQGRVSFSDGLADIL 638
H+ +LAA SP+F +F++G++E E V L+ S L ++L
Sbjct: 157 HISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELL 202
>At3g61600.1 68416.m06900 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 501 HVHKVVLAAGSPYFKAMFTSGLKECEMSRVRLQGRVSFSDGLADIL 638
H+ +LAA SP+F +F++G++E E V L+ S L ++L
Sbjct: 157 HISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELL 202
>At2g30520.1 68415.m03717 signal transducer of phototropic response
(RPT2) identical to RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112
Length = 593
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 450 SHQMLTDVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKECEMSRVRL 596
S + TDVV+EVG F +HK +L A S Y + + K+ +++R+ L
Sbjct: 27 SQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMES-KDSDVTRINL 74
>At1g04390.1 68414.m00429 expressed protein
Length = 849
Score = 35.9 bits (79), Expect = 0.029
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 501 HVHKVVLAAGSPYFKAMFTSGLKECEMSRVRL 596
H H+V+L++G Y +A+F SG++E + R+ +
Sbjct: 682 HSHRVILSSGCEYLRALFRSGMQESHLDRLNV 713
>At2g46260.1 68415.m05752 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 501 HVHKVVLAAGSPYFKAMFTSGLKECEMSRVRLQGRVSFSDGLADIL 638
H+ +LAA SP+F +F++G++E E V L+ L ++L
Sbjct: 155 HISSPILAAKSPFFYKLFSNGMRESEQRHVTLRISAQEEGALMELL 200
>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 710
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 462 LTDVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKE 572
L+DV V F+ H++ L A S F+AMF G +E
Sbjct: 540 LSDVTFLVEGRTFYAHRICLLASSDAFRAMFDGGYRE 576
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 468 DVVLEVGNELFHVHKVVLAAGSPYFKA 548
DVV +V E F+ HK+VLA SP F A
Sbjct: 204 DVVFQVDGETFNAHKLVLATRSPVFNA 230
>At4g01160.1 68417.m00154 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 505
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 501 HVHKVVLAAGSPYFKAMFTSGLKECEMSRVRLQGRVSFSDGLADIL 638
H+ +LAA SP+F +F++G+ E E ++ L+ S + ++L
Sbjct: 101 HISSAILAAKSPFFYKLFSNGMLESEQKQMTLKIDASEETAVMELL 146
>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 709
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 462 LTDVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKECEMSRVRL 596
++DV + + F+ HK+ L A S F+AMF KE V +
Sbjct: 539 MSDVTFLIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEI 583
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 468 DVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLK 569
DV EV E F HK+VLAA S F+A L+
Sbjct: 203 DVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLR 236
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 468 DVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLK 569
DV EV E F HK+VLAA S F+A L+
Sbjct: 203 DVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLR 236
>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 465
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 465 TDVVLEVGNELFHVHKVVLAAGSPYFKAMF 554
+D+ V E F H++VLAA SP F++ F
Sbjct: 216 SDITFNVSGEKFRAHRLVLAARSPVFESEF 245
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 450 SHQMLTDVVLEVGNELFHVHKVVLAAGSPYFKA 548
S + L DV + V F+ H+V+LA+ S YF+A
Sbjct: 333 SVESLADVCVRVDKRNFYCHQVILASRSEYFRA 365
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 468 DVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKE 572
DV+ V H+V+L+A SP+FK F + K+
Sbjct: 174 DVMFYVQGRPIEAHRVILSARSPFFKQKFENEWKD 208
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 441 TMRSHQMLTDVVL-----EVGNELFHVHKVVLAAGSPYFKAMFTSGLKECEMSRVRLQGR 605
T + + TDVVL G+ HK VL + SP FKAM + ++E +++
Sbjct: 56 TSSTSRSFTDVVLIASEDNAGSPPIPAHKSVLVSRSPVFKAMLENEMEESLSGTIKISD- 114
Query: 606 VSFSDGLADILY 641
VS+ D L +Y
Sbjct: 115 VSY-DALRTFVY 125
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 456 QMLTDVVLEVGNELFHVHKVVLAAGSPYFKAMF 554
Q +DV V L H H+ +LAA S +F+ F
Sbjct: 24 QAFSDVTFSVEGRLVHAHRCILAARSLFFRKFF 56
>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 491
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 456 QMLTDVVLEVGNELFHVHKVVLAAGSPYFKAMF 554
Q +DV V L H H+ +LAA S +F+ F
Sbjct: 23 QAFSDVTFSVEGRLVHAHRCILAARSLFFRKFF 55
>At5g13600.1 68418.m01574 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000; contains
BTB/POZ domain, Pfam:PF00651
Length = 591
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 468 DVVLEVGNELFHVHKVVLAAGSPYFKAMFT 557
DV+++V +E FH+HK L + S Y + +F+
Sbjct: 29 DVMIQVVDESFHLHKFPLLSRSGYLETLFS 58
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 498 FHVHKVVLAAGSPYFKAMFTSGLKECEMSRVRL 596
F HKV+L+ S F MFT+G+ E S + L
Sbjct: 364 FQSHKVILSLWSVAFAKMFTNGMSESHSSTIYL 396
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 498 FHVHKVVLAAGSPYFKAMFTSGLKECEMSRVRL 596
F HKV+L+ S F MFT+G+ E S + L
Sbjct: 364 FQSHKVILSLWSVAFAKMFTNGMSESHSSTIYL 396
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 456 QMLTDVVLEVGNEL--FHVHKVVLAAGSPYFKAMFTSGLKECEMS 584
QM TDV+++ G E HK VLAA S F+ M S EC+ S
Sbjct: 21 QMHTDVLVKPGEEAPPIPTHKAVLAARSKVFRNMLDS--DECKTS 63
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 456 QMLTDVVLEVGNEL--FHVHKVVLAAGSPYFKAMFTSGLKECEMS 584
QM TDV+++ G E HK VLAA S F+ M S EC+ S
Sbjct: 21 QMHTDVLVKPGEEAPPIPTHKAVLAARSKVFRNMLDS--DECKTS 63
>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 659
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -2
Query: 404 HAECHIADLVGPTPGGILEVAVTTNRRQVIQHVGPSRVFVSFHYCTFIYYLKSPLCKPNV 225
H EC + D G PG + V T +V+ + SR F C KS P +
Sbjct: 586 HTECVVGDFSGLMPGSV--VKAETGSYEVVLNKNVSRPFC--RQC------KSHCMYPII 635
Query: 224 YSFPKETTNYL 192
Y P+ + +YL
Sbjct: 636 YKIPETSVSYL 646
>At1g30440.1 68414.m03719 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 665
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 465 TDVVLEVGNELFHVHKVVLAAGSPYFKAMFTSGLKE 572
+D+V+EVG FH+HK L + S + KE
Sbjct: 28 SDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKE 63
>At5g03250.1 68418.m00274 phototropic-responsive NPH3 family protein
contains some similarity to root phototropism RPT2
[Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
transducer of phototropic response PMID:10662859
Length = 592
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 459 MLTDVVLEVGNELFHVHKVVLAAGS 533
+++DV +EVG+ FH+HK L + S
Sbjct: 26 LVSDVTIEVGDMKFHLHKFPLLSRS 50
>At2g37720.1 68415.m04625 expressed protein
Length = 482
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 490 FPTSNTTSVSIWCDLIVNIIFMNS 419
FPT+NTT +S W + +++ MN+
Sbjct: 266 FPTTNTTVLSYWSASLTDLVPMNN 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,598,480
Number of Sequences: 28952
Number of extensions: 322983
Number of successful extensions: 766
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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