Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0848
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            25   0.79 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.79 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.7  

>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 358 VEFCNAVGWLQGKSSRIKTMAQLIHNLGDIS 266
           +E CN  G++  + S  + M  L H  GD++
Sbjct: 52  IEGCNETGFINSQPSMAEFMTALPHLSGDMT 82


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 358 VEFCNAVGWLQGKSSRIKTMAQLIHNLGDIS 266
           +E CN  G++  + S  + M  L H  GD++
Sbjct: 52  IEGCNETGFINSQPSMAEFMTALPHLSGDMT 82


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 304 TMAQLIHNLGDISGY*TACAVSGLQ 230
           T A L+HNLG I+   T   +  LQ
Sbjct: 92  TKADLVHNLGTIAKSGTKAFMEALQ 116


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 68  SHGDASSINVGAGYSIG 118
           S GDAS+ ++G+G   G
Sbjct: 151 SPGDASNASIGSGEGTG 167


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 68  SHGDASSINVGAGYSIG 118
           S GDAS+ ++G+G   G
Sbjct: 307 SPGDASNASIGSGEGTG 323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,200
Number of Sequences: 336
Number of extensions: 3139
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)