Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0848
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)                30   1.6  
SB_16243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_14431| Best HMM Match : HTH_5 (HMM E-Value=7.8e-06)                 28   8.4  
SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)            28   8.4  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   8.4  

>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
          Length = 772

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +2

Query: 38  STQNYQPATNSH--GDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHATI 211
           +TQ+ Q   NS+  G         GYS G    S++ D    + L        +NG ++ 
Sbjct: 192 ATQSRQSLLNSYSAGAGGLAGYSPGYSAGANTASYASDPSYQSSLSNGLGSSLSNGMSSS 251

Query: 212 QLAPITLQPTHGAGGLVSGDISQIMNQ-LSHSLNSGALS 325
               ++   T+G    +S  +S  ++Q LS SL++G  S
Sbjct: 252 LSNGLSSSMTNGFSSSLSNGMSPSLSQGLSSSLSNGLSS 290


>SB_16243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 42  HKTTNQPRIRMAMPALLMSELDIVLVE*NQA 134
           H T  Q ++ +  P + +S+ D++L+E N A
Sbjct: 10  HNTAQQQKVSILKPPIYLSQYDVILIEHNTA 40


>SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 900

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 481 ERSQFLWFNWTSII*SIRVSVFAILSFDI 567
           E  Q+LWF+W  I  + R   F +L F +
Sbjct: 267 EHQQYLWFSWVFIDGTRRYFTFTVLPFGL 295


>SB_14431| Best HMM Match : HTH_5 (HMM E-Value=7.8e-06)
          Length = 177

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 119 GIKPSFSYDGQGSAGLQYASQEYPANGHATIQLAPITLQPTHGAGGLVSGDISQIMN 289
           G+     +D   S   + A+    A GHAT +L+   L    G+GG ++GDI+Q ++
Sbjct: 60  GVVLPIRFDYSRSMEHKNATHALAALGHAT-RLSIFRLLVQAGSGGKLAGDIAQSLS 115


>SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)
          Length = 872

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = +2

Query: 47  NYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHA 205
           NY     + G+ +  N   GY  GG     +Y     AG  YA   Y    +A
Sbjct: 621 NYADGNYAGGNYADGNYAGGYYAGGYYTDGNYTDGNYAGGNYAGGNYAGGNYA 673


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 9   QQAISHHIKSVHKTTNQPRIRMAMPALLMSELDIVLVE*NQALVTMVKDLL 161
           QQ +  H  S+H TT  PR  M+   L  SE+ ++ V  N+ + T  K L+
Sbjct: 636 QQTVDSHKTSMHSTTLSPRPLMS-ANLATSEVSVLKVSPNE-VATSPKPLM 684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,370,528
Number of Sequences: 59808
Number of extensions: 400605
Number of successful extensions: 1005
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)