Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0848
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY) domain-c...    28   5.2  
At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY) domain-c...    28   5.2  
At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase...    28   5.2  
At4g18150.1 68417.m02697 hypothetical protein                          27   9.0  
At1g04635.1 68414.m00459 ribonuclease P family protein / Rpp14 f...    27   9.0  

>At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY)
           domain-containing protein similar to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 467

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 20  QPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANG 199
           QP +++++  Y      HGD   +  G G       P F+ D     G+ YASQE+    
Sbjct: 129 QPGWEVNSCGY------HGDDGYLYRGQGKG-EPFGPKFTKDDAVGGGINYASQEFFFTK 181

Query: 200 HATI 211
           + TI
Sbjct: 182 NGTI 185


>At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY)
           domain-containing protein similar to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 465

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 20  QPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANG 199
           QP +++++  Y      HGD   +  G G       P F+ D     G+ YASQE+    
Sbjct: 129 QPGWEVNSCGY------HGDDGYLYRGQGKG-EPFGPKFTKDDAVGGGINYASQEFFFTK 181

Query: 200 HATI 211
           + TI
Sbjct: 182 NGTI 185


>At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase GB:BAA88472
           GI:6624205 from (Cucumis sativus); contains Pfam profile
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 459

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 306 LILELFPCNHPTALQNSTLAVKADRVKSYRS 398
           ++++ F C+ PT  QN T AVK  ++  YR+
Sbjct: 346 ILIDQFYCDSPTTCQNQTSAVKISQI-MYRN 375


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 2   HSTASYQPSYQI--STQNYQPATNSHGDA 82
           ++  + Q SYQI  STQNY  AT+S  DA
Sbjct: 434 NAVTNEQVSYQIDSSTQNYNSATDSKTDA 462


>At1g04635.1 68414.m00459 ribonuclease P family protein / Rpp14
           family protein contains Pfam profile: PF01900 Rpp14
           family
          Length = 151

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 292 LIHNLGDISGY*TACAVSGLQCDRSK 215
           +I NL DISG   AC  + L+CD+ K
Sbjct: 98  VILNLLDISGCIRACRDTALKCDKEK 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,360
Number of Sequences: 28952
Number of extensions: 271431
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)