Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0847
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.46 
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.46 
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.2  
SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   4.2  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              28   4.2  
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)                  28   5.6  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  27   7.4  
SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   7.4  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)                     27   9.8  
SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14)                   27   9.8  
SB_2771| Best HMM Match : rve (HMM E-Value=0.00087)                    27   9.8  

>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 22/50 (44%), Positives = 29/50 (58%)
 Frame = -2

Query: 425  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWAS 276
            S    QER++  D + PRH  EL PD+R  D RV ++ R  R P SK A+
Sbjct: 1453 SRVESQERQTMRD-TRPRHPDELRPDIR-HDIRVAQERREGR-PDSKDAT 1499


>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 425 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSP 294
           STT   E +SSTD  EP +  +    + +RD R    NR  R P
Sbjct: 195 STTETSETQSSTDTREPVNNRDTRETVNNRDTRDTVNNRDTRDP 238


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 310 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 206
           DS  ++DP G+RR++  F  E R V    L+  D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135


>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 467 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 318
           G S+ RS  D A+  T PR   ++      P       P++ SRD   +K
Sbjct: 300 GPSIARSHSDWAITRTKPRNRERAPESSQAPNDEAGKNPEVVSRDTMAQK 349


>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 428 PSTTPRQERKSSTDYSE-PRHRTELYPD-LRSRDARVKKKNR 309
           P+T PR +R+S T  S+  RH + L PD +     R ++ NR
Sbjct: 8   PNTIPRSDRRSRTGISQRHRHTSSLTPDTMAGTHLREQQSNR 49


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
 Frame = +3

Query: 18   MACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTV 197
            M+C   ++ A   +  +FG + H      GG K+    +   +SK    + E G+ + +V
Sbjct: 2278 MSCLMQNSHAHVVKVTNFGVITHGYAVFEGGKKI-EGPVTKASSKCMIMVEERGEGLDSV 2336

Query: 198  E---PRESGGSKQCDFTSRV-SH-SKRETRRRSPF-GSRRSMLSVFFLNTCITA 341
            E       G  K  D  ++  SH S R+++ R    G+RR+     F+   I A
Sbjct: 2337 EDTGQENEGWEKDDDSVNKEGSHKSGRDSQGRGDVKGTRRTSDQTLFIAVSIPA 2390


>SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +3

Query: 39  NTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNAS-KAEASLAESGKDMLTVEPRESG 215
           +TA  E++ +F  +  A     G  K+ +A   +  + K + + AE+G D+L        
Sbjct: 184 DTANAEKSGNF-KMDTAKSEIGGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVF 242

Query: 216 GSKQCDFTSRVSHSKRETRR 275
            ++Q   TS++  ++++TRR
Sbjct: 243 NNEQFSATSQIKGTEKDTRR 262


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 44  CSVREEPQFRTFGSCTRPSG 103
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 460 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 371
           + T  ST   +R  HP +  S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197


>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 452 RSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK-KNR*HRSPRSKWAS 276
           RS  D    ST     R S+   S+P+   EL+   R++ A  ++  ++ H  PR K  +
Sbjct: 218 RSYQDLHRQSTPQHGRRGSTQQSSQPKFVNELFYKQRAKSAHSQRPTDKLHLPPRPKTVA 277

Query: 275 TSR 267
           + R
Sbjct: 278 SFR 280


>SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)
          Length = 217

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 82  FMHSAERPVVRSYHPRDYA*TPLRPKPA*PNPARICSLWSPESREALNNVTLLVAFRI-- 255
           F H +  P+ R +HP      PL P+    +   +  ++ PESREA   V   V  RI  
Sbjct: 153 FHHESNEPLPRMFHPESN--EPL-PRMFTESNEHLPRMFHPESREAAVVVKPFVPVRIAH 209

Query: 256 QNA 264
           QNA
Sbjct: 210 QNA 212


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 26/81 (32%), Positives = 36/81 (44%)
 Frame = -2

Query: 428 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWASTSRLAF*MR 249
           PST  R+ R  S   S    ++    + RSR +R  KK+R  R  RS+    SR     R
Sbjct: 205 PSTDKRKSRSRSRSRSRSHRKSRKRSESRSR-SRSPKKSRSAR--RSRSPQKSRSPQRSR 261

Query: 248 NATSKVTLFRASRLSGLHSEH 186
           +  S    +R+SR    H  H
Sbjct: 262 SPRSS-KRYRSSRSHRKHRSH 281


>SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 425 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSP 294
           STT   E +S+T+  E +  T+    + +RD R    NR  R P
Sbjct: 813 STTETPETQSTTETPENQSTTDTRDPVNNRDTRDPVNNRDTRDP 856


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 289  PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 140
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 265 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 122
           +R+  E +L + H L PP        +S   SA  +SA   F   P D
Sbjct: 35  ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82


>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 43  LLSTRGTAVSDIWFMHSAERPVVRSYHPRDY 135
           LLS  G A++D+  +H A+ P   +Y P  Y
Sbjct: 151 LLSAFGMALADV--VHEAQEPCAHTYEPDSY 179


>SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)
          Length = 419

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 425 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSP 294
           STT   E +S+TD  +P +  +    + + D R    NR  R P
Sbjct: 168 STTTTPETQSTTDTRDPVNNNDTRDPVNNNDTRDPVNNRDTRDP 211


>SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14)
          Length = 597

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 477 TWRRAESQQIAARRCSTEHNTPPGT 403
           TWRR   +QI  R CS+E N P  T
Sbjct: 502 TWRR-HVEQIRPRYCSSEDNEPNDT 525


>SB_2771| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 809

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +1

Query: 175 PARICSLWSPESREALNNVTLLVAFR--IQNARRDVEAHLDRGDRCYRFFFLTRASRLRR 348
           P+  CS    +    L   T +  +R  +   R   EAH+ R  RC    ++ R  RL+ 
Sbjct: 517 PSASCSTTRADGNRLLETDTPVAMYRDTLLPKRNVGEAHVRRRTRCVPSSYILRQRRLQG 576

Query: 349 -SGYNSVRCRGSE*SVDDFRSW 411
            +  ++   +GS  S+D  R W
Sbjct: 577 VTALHAKLPKGSA-SIDRVRRW 597


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,363,137
Number of Sequences: 59808
Number of extensions: 349975
Number of successful extensions: 1216
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)