Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0847
(540 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24750.1 68417.m03542 expressed protein 31 0.37
At1g44740.1 68414.m05125 expressed protein ; expression supporte... 29 1.5
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 27 6.1
At4g27120.2 68417.m03898 expressed protein 27 6.1
At4g27120.1 68417.m03897 expressed protein 27 6.1
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 27 6.1
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi... 27 6.1
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei... 27 6.1
At1g14740.1 68414.m01762 expressed protein 27 8.0
>At4g24750.1 68417.m03542 expressed protein
Length = 260
Score = 31.5 bits (68), Expect = 0.37
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = -3
Query: 433 LYRAQHPARNGSRLQTIPSP--DIELSYIRTFGAVMHVLRKKTDSIDLRDPNGLRRRVSR 260
L+R QH S + ++ SP LS +R FG + ++ + IDL+ + R
Sbjct: 19 LFRNQHSRMTSSMVSSLKSPIGGTSLSTVRRFGVGVVRMQAVDEDIDLKQMRDIAAAKKR 78
Query: 259 FECETRLVKSHCLEPPDSRGSTVSIS 182
++ R K L P ++ G +S+S
Sbjct: 79 WDGLLREGKVKLLTPREA-GYAISLS 103
>At1g44740.1 68414.m05125 expressed protein ; expression supported
by MPSS
Length = 311
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 169 PNPARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGD----RCYRFFFLTRAS 336
PNP R W + R+ +NN L A+R+ E L +G+ + + + S
Sbjct: 91 PNPIR----WE-KHRDVINNTRL--------AKRNRETDLGQGEVDSFKLHNSIKFSCGS 137
Query: 337 RLRRSGYNSVRCRGSE*SVDDFR 405
++RR YN C G+ ++DD R
Sbjct: 138 KMRRRRYNVSTCGGASLAIDDVR 160
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 15 LMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEASLAESGKD 185
L+ C CD + N +H ++ +K P AGL C +A+ S GK+
Sbjct: 642 LVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADCSPDSGGKE 699
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 266
+ RA GG ++ AS + +++ E+G + E+GG++ + +RE
Sbjct: 47 VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106
Query: 267 TRRRSPFGSRRS 302
+R++ +R S
Sbjct: 107 AQRQAEEATRES 118
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 266
+ RA GG ++ AS + +++ E+G + E+GG++ + +RE
Sbjct: 47 VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106
Query: 267 TRRRSPFGSRRS 302
+R++ +R S
Sbjct: 107 AQRQAEEATRES 118
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -2
Query: 473 GAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSP 294
GAG +RS+HD S + S + S + D R++ V K + R+
Sbjct: 563 GAGSRSSRSEHDKVTLSKATAMRQNSMKEVSLASEMEVNFNDYSHRNSGVSKDQQ-QRAK 621
Query: 293 RSKWASTSRLAF 258
+S +AS + +F
Sbjct: 622 KSGFASIVKKSF 633
>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 638
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +3
Query: 42 TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDM 188
T Y S G LVH L A PSA N + SLAE+ DM
Sbjct: 13 TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61
>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
hsp20 family protein contains Pfam profile: PF00011
Hsp20/alpha crystallin family
Length = 285
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 151 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 291
RPK P A + ++WSP S A + + +VA + A D+ +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 108 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 281
G +L + LC N+ K SL + GK+++T S K + DF + + ++R++
Sbjct: 67 GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,208
Number of Sequences: 28952
Number of extensions: 232354
Number of successful extensions: 656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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