Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1465
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)               30   1.5  
SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)                   29   2.7  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 29   3.6  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           28   8.2  
SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)                   28   8.2  
SB_51448| Best HMM Match : DUF910 (HMM E-Value=9.5)                    28   8.2  

>SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
          Length = 556

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 578 PNTCDTNYDAVALIR-GELFIFEDRYHWWIGAHGRYPG 688
           P+TC T+ D V +   G  + F+D Y W +   G  PG
Sbjct: 292 PDTCTTDLDTVVVAGDGNTYAFKDAYVWKLRETGFAPG 329


>SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1036

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 424 QTIRSFLGKITLSRTTLDQIILSDHTIQKNYHYYSK 531
           QT+   LGK+     TLD+I+ + HT++ ++  Y +
Sbjct: 169 QTVFEHLGKVLTVLITLDEILDASHTLKDHWKLYRR 204


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 290 SLPQYNRRSSTQNELQLPSN*DYHARNNLPPPIPL*TGVSQLPKTKLSGR 439
           S P Y R +       LP     HA+   PPP     G + LP+T  SGR
Sbjct: 309 SEPGYVRSAVATTSHSLPRG-PVHAKKGPPPPTLPKRGTATLPRTSSSGR 357


>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
          Length = 1575

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 314 IFGCIVVMTIRVIRSSRVVNGFLDGSRG 231
           IF C+ ++T+  + SS+VVN  L G  G
Sbjct: 229 IFSCMAIVTLINVASSKVVNDILHGKLG 256


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 106  HFLLFNFGHTFVECHYDHLQVIQS*LNTLMYPW 8
            +++LF FGH+ +     H+ VI    N+ + PW
Sbjct: 965  YYILFKFGHSQLNVPAHHVTVILCMFNSCINPW 997


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 365 VRGSLNSRVIVIRSAWMIFGCIVVMTIRVIRSSRVVNGFLDGSRGM 228
           +R S+  R+      W  F     M IR+   +R  NGFLDG RG+
Sbjct: 75  MRTSVKVRLHRGNGGWRAFDARFTMEIRITLLNRQHNGFLDG-RGV 119


>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 347 SRVIVIRSAWMIFGCIVVMTIRVIRSSRVVNGFLDGSRGM-CRNSMMSIMV 198
           +RVI+ ++ +++ G ++   +R I   R  N FL+G     C+ + + I+V
Sbjct: 146 TRVIINQTLFVLVGMVLCFAVRKITKIRTSNLFLEGQGSTGCQATAICIIV 196


>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
          Length = 1445

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 280 TLIVITTIQPKIIHAERITITLELRLPRTQ*LTAPDTPINRSIPAT 417
           T ++I    PK+   ++    LE++   T     P TPI+ +IPA+
Sbjct: 434 TKVMIVCSAPKLRELQKSGSNLEVQFDETIPAPTPTTPISPAIPAS 479


>SB_51448| Best HMM Match : DUF910 (HMM E-Value=9.5)
          Length = 201

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 389 VSGAVSYCVRGSLN-SRVIVIRSAWMIFGCIVVMTIRVIRSSRVVN 255
           V G  +  +  + N SR I +RS   I G IV+M I  I  S ++N
Sbjct: 112 VVGGTTMMIMFTTNCSRAIPVRSCLQILGTIVLMEIIQILKSDIIN 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,536,196
Number of Sequences: 59808
Number of extensions: 412029
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)