Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1465
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58830.1 68418.m07372 subtilase family protein contains simil...    29   2.2  
At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1...    29   2.2  
At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1...    29   2.2  
At5g64040.1 68418.m08040 photosystem I reaction center subunit P...    29   2.9  
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati...    29   2.9  
At1g48270.1 68414.m05392 G protein coupled receptor-related iden...    29   3.8  
At2g41420.1 68415.m05111 proline-rich family protein contains pr...    28   6.7  
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ...    27   8.9  

>At5g58830.1 68418.m07372 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 671

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +1

Query: 454 TLSRTTLDQIILSDHTIQKNYHYYSKAHAATKADSNFTI 570
           TL   + D +I S  T+Q+N +Y S +   ++++S+FT+
Sbjct: 546 TLKLISGDAVICSGKTLQRNLNYPSMSAKLSESNSSFTV 584


>At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1.2)
           plant glutamate receptor family, PMID:11379626
          Length = 867

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 354 SQFEGNCNSFCVDDLRLYCGNDDQGNKVFSGSKRVSRW 241
           S+F+G   +F +DD++L     +  N + SG +RV  W
Sbjct: 360 SRFKGLSGNFQLDDMKLLSDKFEIVNMIGSGERRVGFW 397


>At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1.2)
           plant glutamate receptor family, PMID:11379626
          Length = 750

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 354 SQFEGNCNSFCVDDLRLYCGNDDQGNKVFSGSKRVSRW 241
           S+F+G   +F +DD++L     +  N + SG +RV  W
Sbjct: 360 SRFKGLSGNFQLDDMKLLSDKFEIVNMIGSGERRVGFW 397


>At5g64040.1 68418.m08040 photosystem I reaction center subunit
           PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
           SP:P49107; Plant Physiol. 109 (3), 1126 (1995); similar
           to SP|P31093 Photosystem I reaction centre subunit N,
           chloroplast precursor (PSI- N) {Hordeum vulgare}
          Length = 171

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
 Frame = -2

Query: 374 SYCVRGS----LNSRVIVIRSAWMIFGCIVVMTIRVIRSSRVVNGFLDGSRGMCRNSMM 210
           SY + GS    LN +V ++ S+ + FG    M + VI++ RVV   +DGS G  R++M+
Sbjct: 12  SYAIAGSGSVELNQKVGLVNSS-VGFGQKKQMIMPVIKAQRVVGDDVDGSNGR-RSAMV 68


>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
           similar to (1-4)-beta-mannan endohydrolase [Coffea
           arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
           GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
           profile PF00150: Cellulase (glycosyl hydrolase family 5)
          Length = 408

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 354 SQFEGNCNSFCVDDLRLYCGNDDQGNKVFSGSKR--VSRWITGHVSELHDV 208
           + F  N N   +D   ++CG+D    ++   S+   + RW+ GH+ +  ++
Sbjct: 263 ADFIANHNIDAIDFASMHCGSDLWFQRLDQNSRLAFIKRWLEGHIEDAQNI 313


>At1g48270.1 68414.m05392 G protein coupled receptor-related
           identical to putative G protein coupled receptor
           GI:2104224 from [Arabidopsis thaliana]
          Length = 326

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 252 VSRWITGHVSELHDVYYGGYKAFWL 178
           +  W  G ++ +HD    G+K FWL
Sbjct: 226 IGSWAFGTINRIHDFIEPGHKIFWL 250


>At2g41420.1 68415.m05111 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 98

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 441 PRQDYPKQDYPRSDYPKR 494
           P+Q YP Q YP+  YP++
Sbjct: 38  PQQGYPPQGYPQQGYPQQ 55


>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 435 PDSLVLGSWDTPVYRGIGGG 376
           PD   +G  D+P+YRG  GG
Sbjct: 220 PDPTAIGGVDSPLYRGNNGG 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,054
Number of Sequences: 28952
Number of extensions: 284959
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)