BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1464 (796 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g34000.2 68417.m04825 ABA-responsive element-binding protein ... 32 0.50 At4g34000.1 68417.m04824 ABA-responsive element-binding protein ... 32 0.50 At5g58830.1 68418.m07372 subtilase family protein contains simil... 31 1.2 At3g30540.1 68416.m03865 (1-4)-beta-mannan endohydrolase family ... 29 2.7 At5g64040.1 68418.m08040 photosystem I reaction center subunit P... 29 4.7 At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 28 8.2 >At4g34000.2 68417.m04825 ABA-responsive element-binding protein / abscisic acid responsive elements-binding factor (ABRE) / ABA-responsive elements-binding factor (ABF3) identical to abscisic acid responsive elements-binding factor (ABF3) GI:6739280 from [Arabidopsis thaliana]; identical to cDNA abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds GI:6739279 Length = 454 Score = 31.9 bits (69), Expect = 0.50 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%) Frame = +3 Query: 219 VPNMPRDPSRNPFTTREDLITLIV--ITTIQPKII-------HAERITITLELRLPRTQ* 371 V N P+D S N R+DL+T + QP+++ +++ T E P+ Sbjct: 219 VANQPQDLSGNGVAVRQDLLTAQTQPLQMQQPQMVQQPQMVQQPQQLIQTQERPFPKQTT 278 Query: 372 LTAPDT--PINRSIPATQDQTIR-SILG 446 + +T +NRS PATQ Q ++ SILG Sbjct: 279 IAFSNTVDVVNRSQPATQCQEVKPSILG 306 >At4g34000.1 68417.m04824 ABA-responsive element-binding protein / abscisic acid responsive elements-binding factor (ABRE) / ABA-responsive elements-binding factor (ABF3) identical to abscisic acid responsive elements-binding factor (ABF3) GI:6739280 from [Arabidopsis thaliana]; identical to cDNA abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds GI:6739279 Length = 449 Score = 31.9 bits (69), Expect = 0.50 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%) Frame = +3 Query: 219 VPNMPRDPSRNPFTTREDLITLIV--ITTIQPKII-------HAERITITLELRLPRTQ* 371 V N P+D S N R+DL+T + QP+++ +++ T E P+ Sbjct: 219 VANQPQDLSGNGVAVRQDLLTAQTQPLQMQQPQMVQQPQMVQQPQQLIQTQERPFPKQTT 278 Query: 372 LTAPDT--PINRSIPATQDQTIR-SILG 446 + +T +NRS PATQ Q ++ SILG Sbjct: 279 IAFSNTVDVVNRSQPATQCQEVKPSILG 306 >At5g58830.1 68418.m07372 subtilase family protein contains similarity to prepro-cucumisin GI:807698 from [Cucumis melo] Length = 671 Score = 30.7 bits (66), Expect = 1.2 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +3 Query: 453 TLSRTTLDQIILSDHTIQRNYHYYSKAHAATKADSNFTI 569 TL + D +I S T+QRN +Y S + ++++S+FT+ Sbjct: 546 TLKLISGDAVICSGKTLQRNLNYPSMSAKLSESNSSFTV 584 >At3g30540.1 68416.m03865 (1-4)-beta-mannan endohydrolase family similar to (1-4)-beta-mannan endohydrolase GI:10178872 from [Coffea arabica] Length = 351 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -3 Query: 353 SQFEGNCNSFCVDDLRLYCGNDDQGNKVFSGSK--WVSRWITGHVRNSMMSI 204 + F N N +D ++CG+D ++ S+ ++ RW+ GH+ ++ ++ Sbjct: 247 ADFIANHNIDAIDFASMHCGSDLWFQRLDQNSRLAFIKRWLEGHIEDAQNNL 298 >At5g64040.1 68418.m08040 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) SP:P49107; Plant Physiol. 109 (3), 1126 (1995); similar to SP|P31093 Photosystem I reaction centre subunit N, chloroplast precursor (PSI- N) {Hordeum vulgare} Length = 171 Score = 28.7 bits (61), Expect = 4.7 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%) Frame = -1 Query: 373 SYCVRGS----LNSRVIVIRSAWMIFGCIVVMTIRVIRSSRVVNGFLDGSRG 230 SY + GS LN +V ++ S+ + FG M + VI++ RVV +DGS G Sbjct: 12 SYAIAGSGSVELNQKVGLVNSS-VGFGQKKQMIMPVIKAQRVVGDDVDGSNG 62 >At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 435 Score = 27.9 bits (59), Expect = 8.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -3 Query: 440 DRPDSLVLGSWDTPVYRGIGGG 375 + PD +G D+P+YRG GG Sbjct: 218 NHPDPTAIGGVDSPLYRGNNGG 239 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,343,711 Number of Sequences: 28952 Number of extensions: 331807 Number of successful extensions: 755 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 733 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 752 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1794809600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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