Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1462
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   1.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   7.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 624 YVYIIFCVNLM**LCIFLF 680
           Y +IIF V+L+  LCI+ F
Sbjct: 118 YAFIIFTVHLLFLLCIYYF 136



 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 624 YVYIIFCVNLM**LCIFLFEY 686
           Y +I+F V+L+  +CI+ F Y
Sbjct: 243 YAFILFTVHLLLLVCIYYFYY 263


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 48  RGSHRWSRPPEGLP 7
           +G H W + P+G P
Sbjct: 62  KGFHPWKKSPQGAP 75


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 769 FTENISNNYCNSQFSQEVDLNNNYI 843
           F +   + YC  +F ++ D N +YI
Sbjct: 418 FFQQFFHCYCPIKFGRKADPNGDYI 442


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,839
Number of Sequences: 336
Number of extensions: 5114
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)