Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1460
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   3e-10
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                33   0.34 
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 32   0.59 
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)            32   0.59 
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_54830| Best HMM Match : Fascin (HMM E-Value=2.6)                    29   3.1  
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)                       29   5.5  
SB_28255| Best HMM Match : Curto_V2 (HMM E-Value=0.79)                 28   7.2  
SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)            28   7.2  
SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)                 28   7.2  
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    28   9.5  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   9.5  
SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747  DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKKMK 580
            D  LY   +I A+G DLWQVKSGTIFD+ L+TD    A++   E   K +EGEKKMK
Sbjct: 985  DDKLYMYKDIGAIGFDLWQVKSGTIFDNVLVTDSVEHAEQFAKETFDKTKEGEKKMK 1041


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 711 VGLDLWQVKSGTIFDDFLITDDPAAA 634
           VGL+LW + S  +FD+ ++T+D A A
Sbjct: 252 VGLELWSMTSDILFDNVIVTNDKAVA 277


>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 131 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYETTDTFYLHTTCPY 280
           ++++H P H  AR  T+    TY +     H+H H+Y    T      C Y
Sbjct: 263 QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 313


>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
          Length = 231

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 131 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYETTDTFYLHTTCPY 280
           ++++H P H  AR  T+    TY +     H+H H+Y    T      C Y
Sbjct: 38  QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 88


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 215  PHLHGHQYETTDTFYLHTTCPYESVKFEPNTRTVLKTNDNSI 340
            P ++ H  E +++F +  TC  E+    P+T TV   +D+++
Sbjct: 4749 PLINDHVVENSESFSIKLTCDEETTSANPDTVTVTVLDDDAV 4790


>SB_54830| Best HMM Match : Fascin (HMM E-Value=2.6)
          Length = 213

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 125 TVKLYI-HV-PAHGARPITKH*IITYINSERNPHLHGHQYETTDTFYLHTT 271
           TV++YI HV  +  AR        T + + RN HLH  +   TD+++LH T
Sbjct: 12  TVRIYIQHVNDSQNARTCN-----TTLATHRNAHLHESRERLTDSWHLHAT 57


>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
          Length = 934

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 337 YWNCRRLRNERF*KKNSPRTHTTYPEVLNVLALTN*SQQPTAHRVPP 477
           YWN  R R+ R  + +SPR  T    +     +T+ S  P     PP
Sbjct: 107 YWNSGR-RSPRHSRPSSPRCRTPRNNIFTTPMITSTSASPRGSMAPP 152


>SB_28255| Best HMM Match : Curto_V2 (HMM E-Value=0.79)
          Length = 364

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 296 EPNTRTVLKTNDNS-IGIVEDCATRGFKKRILHA 394
           EP   T+ +T DNS I I EDC+T    K I  A
Sbjct: 119 EPERLTIKETRDNSVISIEEDCSTDAEMKVIYDA 152


>SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)
          Length = 214

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 124 YSKTLHSRPSTRCQTDNKTLNNYIHQF*A*SPSTRTSVRNNGHILLT 264
           Y+ TLH  P+T  +  N+ LNN I       P ++ +  N GH  L+
Sbjct: 43  YNYTLHYEPNTTSKRKNRQLNNIIWYN---PPFSKNTSTNIGHRFLS 86


>SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)
          Length = 320

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 296 EPNTRTVLKTNDNS-IGIVEDCATRGFKKRILHA 394
           EP   T+ +T DNS I I EDC+T    K I  A
Sbjct: 33  EPERLTIKETRDNSAISIEEDCSTDAEMKVIYDA 66


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 125 TVKLYI-HV-PAHGARPITKH*IITYINSERNPHLHGHQYETTDTFYLHTT 271
           T ++Y  HV  +  AR  T+H     +N  R+ HLH  +   TD+ +LH T
Sbjct: 242 TARIYTQHVNDSQTARIYTQH-----VNDSRHTHLHTTRERLTDSTHLHET 287


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 176 LLSVWHRVLGRECKVLLYNNIRCSSPNVLYDC-DCYCTVNLFLILSCEMS 30
           L SV +  +      +LY+ I C   +VLYD  DC  +  L+  + C +S
Sbjct: 89  LSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 138


>SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 221 LHGHQYETTDTFYLHTTCPYESVKFEPNTRTVLKTNDNSIGIVE 352
           L+   +E  D F  +T      +K +   RTV+KT+D    ++E
Sbjct: 432 LNAQDWELEDWFNCYTDLCNRQLKVKVKDRTVIKTSDTEEQVIE 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,592,665
Number of Sequences: 59808
Number of extensions: 378067
Number of successful extensions: 1146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)