Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1459
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.84 
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    24   1.5  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   4.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.8  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 556 RVSITHKDKRL*CRLTTKQHN 618
           RV +  K++R  CR   KQHN
Sbjct: 112 RVQVWFKNRRAKCRQQQKQHN 132


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -2

Query: 510 WRLLVLFSYSNVLLFQ--QFQSRXSC 439
           W L +LFS   V LF+  Q QS   C
Sbjct: 169 WLLSILFSLPTVFLFEEKQVQSMPQC 194


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 249 LQIDTSENSRRLYIMT 296
           +Q D S NSR  Y++T
Sbjct: 382 IQFDQSSNSRNNYVLT 397


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 386 KISILFHIIEHMLNH 342
           KI  + H +EH+L H
Sbjct: 124 KIVFVSHTVEHLLGH 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,785
Number of Sequences: 336
Number of extensions: 3906
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)