Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1457
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43680.1 68414.m05018 hypothetical protein                          28   5.6  
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea...    28   7.4  
At3g50760.1 68416.m05558 glycosyl transferase family 8 protein c...    28   7.4  
At5g48375.1 68418.m05977 glycosyl hydrolase family 1 protein con...    27   9.8  
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ...    27   9.8  
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa...    27   9.8  

>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 431 NLFINWIKYNNTKNSRV-VFS-LHEYPKITQN*IRASNFPH 315
           N    W +  N++NS +  +S LH++P ++ N   A N PH
Sbjct: 135 NSLNRWDQEINSQNSNISTYSPLHDFPVVSWNFYTAGNLPH 175


>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
           family protein similar to Will die slowly protein
           (SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
           PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
          Length = 330

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 183 WSHSASSLICSTSYGTHTLSHWARPLSLRASGFYIYIRSRADKTM 317
           ++H  SSLICS+ Y   +     R LS+  +    Y +   D+ +
Sbjct: 74  FTHHPSSLICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVV 118


>At3g50760.1 68416.m05558 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 Glycosyl transferase
           family 8
          Length = 285

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 280 KPEARSESGR-AQCDRVWVPYEVEQMRLD 197
           KP  R + GR    D +WVPY++ + R D
Sbjct: 253 KPWVRLDDGRPCPLDALWVPYDLLESRFD 281


>At5g48375.1 68418.m05977 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to thioglucosidase (GI:871992) [Arabidopsis
           thaliana]
          Length = 439

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 280 KPEARSESGRAQCDRVWVPYEVEQMRLDA-ECDQPAETSELVDELTVLQHP----KAEGL 116
           KP+ R + G     R +VPY+  Q  +DA E ++       ++ LT  ++P    K  G 
Sbjct: 232 KPKQRGQIGVVMITRWFVPYDSTQANIDATERNKEFFLGWFMEPLTKGKYPDIMRKLVGR 291

Query: 115 RLPQ 104
           RLP+
Sbjct: 292 RLPK 295


>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to fizzy-related
           protein (GI:5813825) Drosophila melanogaster,
           PID:g2326419;
          Length = 518

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 229 PTLCHTGRGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYSCSENTTRE 390
           PT+        H+   +++     GQT   G  D  ++FW +F    S+NT  E
Sbjct: 453 PTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSE 506


>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger) domain
          Length = 359

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 142 ARSTHRPALKFRLVGRIQHPASSALPRMVPTLCHTGRGRSHSAPPVFI 285
           AR  H P L+ R  G     +SSA P  +  L   GR   H AP + +
Sbjct: 11  ARDQHAPLLRPRHDGSFSSSSSSARPTALAVL--LGRITGHRAPSMLV 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,510
Number of Sequences: 28952
Number of extensions: 338278
Number of successful extensions: 703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)