Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1456
         (1001 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   4.9  
At3g57830.1 68416.m06447 leucine-rich repeat transmembrane prote...    28   8.5  
At2g45300.1 68415.m05638 3-phosphoshikimate 1-carboxyvinyltransf...    28   8.5  

>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 276 LVW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYSCSENKTREF 452
           +VW YP    L     HS   +++     GQT   G  D  ++FW +F    S+++  E 
Sbjct: 405 IVWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRESEI 464

Query: 453 FVLLY 467
             L +
Sbjct: 465 GALSF 469


>At3g57830.1 68416.m06447 leucine-rich repeat transmembrane protein
           kinase, putative several receptor-like protein kinases
          Length = 662

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = +2

Query: 104 LLKVGTFFLPILFGSELSPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSDPASSALPRM 283
           LL    FF  I F S L+P         L  LK   L   + V   WS SDP     P +
Sbjct: 9   LLVSSYFFFFINFSSSLNP-----DGLSLLALKSAILRDPTRVMTSWSESDPTPCHWPGI 63

Query: 284 VPT 292
           + T
Sbjct: 64  ICT 66


>At2g45300.1 68415.m05638 3-phosphoshikimate
           1-carboxyvinyltransferase /
           5-enolpyruvylshikimate-3-phosphate / EPSP synthase
           nearly identical to SP|P05466
          Length = 520

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -1

Query: 161 PEIIQNQTRWGERRSPLSVNNAILTKEH*PRISPL 57
           P +I N ++  +R+SPLSV  ++ T++H PR  P+
Sbjct: 14  PSLISNLSKSSQRKSPLSV--SLKTQQH-PRAYPI 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,295,764
Number of Sequences: 28952
Number of extensions: 491182
Number of successful extensions: 964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2450812896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)