Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1455
         (785 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CRS2 Cluster: Chromosome undetermined scaffold_25, wh...    43   0.008
UniRef50_Q3UX95 Cluster: In vitro fertilized eggs cDNA, RIKEN fu...    34   4.6  
UniRef50_A4CIQ2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  
UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10; Bur...    33   8.1  
UniRef50_Q7RN36 Cluster: Putative uncharacterized protein PY0198...    33   8.1  
UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_A0CRS2 Cluster: Chromosome undetermined scaffold_25, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_25,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 176

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +3

Query: 6   IEKKKQKIPLIR*YLLSLCACHRFLISGNDVKV--VVASLYPTALSDASEVFRALSGFKV 179
           + K  QK+PLIR + L L    R+ I+ + + V  ++AS     ++D S +++ + GFK+
Sbjct: 10  LAKLMQKVPLIREHRLKLGQQVRYPITQSPMNVTPIMASRQAETITDTSTIYQLVPGFKI 69

Query: 180 RNRSLYR 200
            N+S YR
Sbjct: 70  NNQSTYR 76


>UniRef50_Q3UX95 Cluster: In vitro fertilized eggs cDNA, RIKEN
           full-length enriched library, clone:7420419G09
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: In vitro fertilized eggs cDNA, RIKEN
           full-length enriched library, clone:7420419G09
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 116

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 210 GMYANVSRTVSGCGVRVNFSGVLIV*YGSILIALLIRSQFVCI 338
           G+Y    + V GC +R  F    ++   S +I +L+RS  VC+
Sbjct: 30  GLYTLTGKDVQGCSLRPEFLATALLDVHSYIITILLRSGIVCL 72


>UniRef50_A4CIQ2 Cluster: Putative uncharacterized protein; n=1;
           Robiginitalea biformata HTCC2501|Rep: Putative
           uncharacterized protein - Robiginitalea biformata
           HTCC2501
          Length = 539

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 292 PY*TIKTPEKFTRTPQPDTVRDTLAYIPDRSRYNDLFRTLNP 167
           PY   + PE    TP PD+VR  LA +PD+   N  F    P
Sbjct: 269 PYTGGEAPELRLLTPVPDSVRTLLARVPDKDSLNFWFTPWEP 310


>UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10;
           Burkholderia|Rep: ATP/GTP-binding site motif A -
           Burkholderia cenocepacia MC0-3
          Length = 383

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = -2

Query: 259 TRTPQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEI 80
           T  PQ D V DT++ +PD +   +L R+  PL A       D AV           L E 
Sbjct: 7   TLQPQTDRVADTMSVLPDDASVTELMRSFAPLLA-------DEAVTELVINRPQRILTET 59

Query: 79  RNLWHAHKL 53
              W AH L
Sbjct: 60  HRGWQAHDL 68


>UniRef50_Q7RN36 Cluster: Putative uncharacterized protein PY01988;
           n=5; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01988 - Plasmodium yoelii yoelii
          Length = 531

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -2

Query: 610 RMQEWKLLN*NYKKTLFRGFQTVYVKSIKNDYRIQINTHCATS----FSENI-IGALKSN 446
           + + W ++  N  K +  GF  +Y K +KND  + + + C  +    F+ENI +G    N
Sbjct: 50  KKRPWLIIKDNCVKNILNGFPWIYSKDVKNDNDLLLYSPCIVNIKNEFNENIGVGIYNKN 109


>UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 932

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -2

Query: 187 LFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNLWHAHKLNK 47
           +FR +NP K  N  DA DSA G S   + + S P+  NL    K+NK
Sbjct: 164 IFRFVNPRK--NEGDAGDSARGPSCYNSHVVSSPQNYNLSEIKKMNK 208


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,149,734
Number of Sequences: 1657284
Number of extensions: 12657253
Number of successful extensions: 28095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28090
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)