Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1455
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    29   4.6  
At1g29960.1 68414.m03663 signal peptidase I family protein / MAD...    28   8.1  

>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 135 SDASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVSGCG 251
           S+ S V   + GFK RN  ++  R G    V +T+  CG
Sbjct: 310 SNTSPVCNCIKGFKPRNPQVWGLRDGSDGCVRKTLLSCG 348


>At1g29960.1 68414.m03663 signal peptidase I family protein /
           MADS-box protein-related similar to inner mitochondrial
           membrane peptidase 2 [Homo sapiens] GI:14030456;
           contains Pfam profiles PF00461: Signal peptidase I,
           contains Pfam profile PF00319: SRF-type transcription
           factor (DNA-binding and dimerisation domain); MADS-box
           protein AGL64
          Length = 310

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 177 VRNRSLYRDRSGMYANVSRTVSGCGVRVNFSG 272
           ++ R L+R R+G+Y  +S     CG  V F G
Sbjct: 147 IQGRVLWRRRNGIYTKLSELSILCGAEVAFLG 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,052,860
Number of Sequences: 28952
Number of extensions: 284029
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)