Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1454
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20010.1 68415.m02339 expressed protein                             31   1.1  
At5g52180.1 68418.m06477 expressed protein                             30   1.4  
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil...    28   5.8  

>At2g20010.1 68415.m02339 expressed protein
          Length = 834

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 751 RCLKMFSASVHDTTQNRVSQLLIRYRKDRFL 659
           RCL++ S+SVHD  + RV   ++R   D FL
Sbjct: 677 RCLEIISSSVHDRVRTRVISDIMRASFDGFL 707


>At5g52180.1 68418.m06477 expressed protein
          Length = 458

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 639 LNLLASYKNLSFLYLISSWLTLF*VVSWTEAENIFKH 749
           L LL SY+NL+   L+S +LTL  V+S+ +   IF H
Sbjct: 2   LELLGSYRNLTLQILLSLFLTL--VLSFVKISIIFLH 36


>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
           protein contains Pfam profile: PF04981 NMD3 family
          Length = 516

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 90  QQHLSTSAGSNLFNSKYHYNIRGCPL 13
           QQ +S    S+L+N KY Y+++ CP+
Sbjct: 228 QQLVSHDVKSSLYNYKYTYSVKICPV 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,949,187
Number of Sequences: 28952
Number of extensions: 246627
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)