Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1453
         (820 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)               30   2.0  
SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)                     29   6.0  
SB_43843| Best HMM Match : Ank (HMM E-Value=1.1e-12)                   28   7.9  

>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
          Length = 1508

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +1

Query: 19  RLICNGVVNCPNITTSEKKFWTAEEKRAKEAYSEDSLRRLGYLDALAGLPLGKMNDESPE 198
           RL+C+GV+   + TT          K A         +R    DAL G P+  ++DE   
Sbjct: 84  RLLCSGVLKNKHGTTQSPCTTMIAVKEAASNEKVARNQRRNETDALPGSPISDLSDEDTP 143

Query: 199 LCARARSTGS 228
           L +R  +  S
Sbjct: 144 LNSRLSTKNS 153


>SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)
          Length = 324

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 171 RKNERRISRVVCQGEKYRKWRVDCSCSRAGLASVLAICALGATW 302
           R N R I   +  GEK+ KWRV+ +       S + +  +   W
Sbjct: 183 RNNSRAIYAEILVGEKHSKWRVNPTSVLFVSVSFIVLMVISLAW 226


>SB_43843| Best HMM Match : Ank (HMM E-Value=1.1e-12)
          Length = 389

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 183 RRISRVVCQGEKYRKWRVDCSCSRAGLA--SVLAIC-ALGATWRLCCRKRSPDEESL 344
           RR + + C+G +  +W V       GLA  + +A C + G   RLC   R  D E L
Sbjct: 40  RRWALLGCRGARRARWGVFVGTGSVGLALSASIAFCLSPGVIERLCKLAREDDVEGL 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,367,302
Number of Sequences: 59808
Number of extensions: 557974
Number of successful extensions: 1535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)