Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1452X
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 29 1.6
03_05_0567 - 25672780-25672965,25673043-25673135,25673237-256732... 28 3.7
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 28 5.0
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 28 5.0
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 27 6.5
07_03_1286 + 25482632-25482685,25483948-25484145,25484242-254844... 27 6.5
07_03_0544 + 19309026-19310105 27 6.5
06_01_0341 - 2456637-2456996 27 6.5
11_01_0202 + 1606317-1606487,1606743-1606805,1607045-1607116,160... 27 8.7
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 27 8.7
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 27 8.7
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 29.5 bits (63), Expect = 1.6
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +2
Query: 173 LQRRGV------QLPRVPGQRPPSRPDGARE-QGLENEQLDYDSLIDGNPSPSLR 316
LQRRGV QLP P PP P G G +N + D DGNP+P R
Sbjct: 87 LQRRGVGGGGWVQLP--PPPPPPPPPQGTLAFYGAQNGRRRLDDDDDGNPNPRSR 139
>03_05_0567 -
25672780-25672965,25673043-25673135,25673237-25673297,
25673385-25673495,25673640-25673825,25673909-25675287,
25675393-25675776,25675813-25676061,25676147-25676386
Length = 962
Score = 28.3 bits (60), Expect = 3.7
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +2
Query: 203 VPGQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRGAGE 382
V P PDG+ + + +E +Y S D PSPS + ++ Y+ E
Sbjct: 23 VVAPEPTVPPDGSSDSDVGDEDEEYSSPSDPCPSPSPKRRK-KGDGEEGDKDYIP--PKE 79
Query: 383 GEQRLRPSGVVPNRQMVKTDAVLPA 457
GE R S P +++ D +PA
Sbjct: 80 GETAPRRSKWQPKKKVTSKDEDVPA 104
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 27.9 bits (59), Expect = 5.0
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Frame = +2
Query: 161 YGQRLQRRGVQLPRVPGQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYL--- 331
+G R +RR + + P + PP RPD G +D ++ + P P L++ + +
Sbjct: 8 FGDRRRRRQPRR-QSPARSPPPRPDHVALLGKALTAVDVEAKEEVEPPPLLQEAKDVLLA 66
Query: 332 -QHSSLWGHQYVTRGAGEG----EQRLRP-SGVVPNRQMVKTDAVLPAYCNPP 472
+ + V GA G EQ+ P S ++P +Q+ T + P +PP
Sbjct: 67 PPPMPVEAAEEVVTGARPGKELSEQKASPASSLLPEKQV--TPPLSPVAHSPP 117
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -1
Query: 469 RVTIRGQNSVSFHHLSVR 416
++T++G+N V+F HLSVR
Sbjct: 44 KLTLKGKNPVTFDHLSVR 61
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +2
Query: 203 VPGQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRGAGE 382
V P PDG+ + + +E +Y S D PSPS + ++ Y+ E
Sbjct: 23 VVAPEPTVPPDGSSDNDVGDEDEEYSSPSDPCPSPSPKRRK-KGDGEEGDKDYIP--PKE 79
Query: 383 GEQRLRPSGVVPNRQMVKTDAVLPA 457
GE R S P +++ D +PA
Sbjct: 80 GETAPRRSKRQPKKKVPSKDEDVPA 104
>07_03_1286 +
25482632-25482685,25483948-25484145,25484242-25484464,
25484762-25484958,25485150-25485237,25487103-25487197,
25487585-25487705,25487795-25487831,25487924-25487951,
25488175-25488327,25488666-25488768,25488868-25488932
Length = 453
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 164 GQRLQRRGVQLPRVPGQRPPSRPDGAREQGLENEQ 268
G+ L+ R V V GQ RP GAR GL ++
Sbjct: 275 GESLRFRSVGASTVKGQTRRERPRGARPHGLTKQK 309
>07_03_0544 + 19309026-19310105
Length = 359
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +2
Query: 275 YDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRGAGEGEQRL---RPSGVVPNRQMVKTDA 445
Y L+ G+ P L + + ++ HQ + A GEQ PS ++ +DA
Sbjct: 244 YAPLLSGSIVPGLEELQVKAEATTGDHQQKSSAAAAGEQSWDLPTPSSSNVEASIIASDA 303
Query: 446 VLPAYCNPPNP 478
++ A NP
Sbjct: 304 LMAAAAASMNP 314
>06_01_0341 - 2456637-2456996
Length = 119
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 9 DXSGITFVMGRYAMLLLAINTVAAMGFIPHGS 104
D + + FV+G Y LLL + ++A P GS
Sbjct: 32 DAAAVAFVLGSYTALLLLFSCLSAFERAPPGS 63
>11_01_0202 +
1606317-1606487,1606743-1606805,1607045-1607116,
1607244-1607351,1607497-1607538,1607965-1608018,
1608130-1608255,1608338-1608427,1608735-1608857,
1608963-1609070,1609412-1609573,1609655-1609711,
1609792-1609884
Length = 422
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 365 TRGAGEGEQRLRPSGVVPNRQMVKTDAVLPAYCNPPNPCPVGYTEDQG 508
+RG + ++ G+ Q +K D +L C PN EDQG
Sbjct: 129 SRGVYHRDLKVSDFGLSALSQQIKDDGLLHTTCGTPNYVAPEVLEDQG 176
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 153 VERMGKDFNDAASSYLEFPASDRHLALM 236
+ER+ ++F DA +YL P + + +A M
Sbjct: 49 IERIRREFEDAKRNYLSIPVAIKDMAKM 76
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 302 SPSLRDQEYLQHSSLW 349
SPS RD+ Y QH+S W
Sbjct: 1293 SPSSRDRAYSQHASTW 1308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,602,714
Number of Sequences: 37544
Number of extensions: 355685
Number of successful extensions: 1237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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