SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1452X
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 31   0.72 
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   1.7  
SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31)                  29   2.2  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 182 RGVQLPRVPGQRPPSRPDGAREQGLE 259
           RG  LPR PG + P RP   R+Q +E
Sbjct: 33  RGQTLPRAPGGQNPLRPPWTRQQSVE 58


>SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 1234

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 248  QGLENEQLDYDSLIDGNPSPSLRDQEYLQHSS-LWGHQYVTRGAGEGEQRLRPSGVVPNR 424
            QG+   Q   D +I    SPS ++Q  + H + +WG + V       + R R   ++   
Sbjct: 988  QGIPRVQCYLDDIIITGSSPSRKEQLAVCHGTIMWGDRVVVL----PKLRRRVLDILHES 1043

Query: 425  QMVKTDAVLPAYCNPPNPCPVGYT 496
               K D  L AY N P+  P GY+
Sbjct: 1044 HTHKLDRFLFAYRNAPH--PTGYS 1065


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 182 RGVQLPRVPGQRPPSRPDGAREQGLE 259
           RG  LPR PG + P RP   R+Q +E
Sbjct: 590 RGQTLPRAPGGQNPLRPPWTRQQSVE 615


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 413 VPNRQMVKTDAVLPAYCNPPNPCP 484
           V  R ++   A+LPAYC PP+  P
Sbjct: 101 VCRRGLISEHALLPAYCTPPDTLP 124


>SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31)
          Length = 406

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
 Frame = +2

Query: 164 GQRLQRRGVQLPRVPGQRPPSR----------PDGAREQGLENEQLDYDSLIDGNPSPSL 313
           G RL+R+G  +P+ P Q+PPS             G       N    YD+   G  SP L
Sbjct: 5   GNRLRRKGSIIPQSPPQQPPSTHYLTLPKLTVGGGDELSDTTNSMTTYDATTTGTLSPDL 64

Query: 314 RDQ 322
            ++
Sbjct: 65  MEE 67


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/76 (25%), Positives = 30/76 (39%)
 Frame = +2

Query: 167  QRLQRRGVQLPRVPGQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSL 346
            Q++Q++ +Q      Q P   P    +Q     QL       G P+P    Q++      
Sbjct: 1155 QQMQQQQLQQQMQQQQPPQQMPQNMPQQQQPATQLPSQ----GQPAPQYFQQQFQMFQQH 1210

Query: 347  WGHQYVTRGAGEGEQR 394
              HQ V  G   G+Q+
Sbjct: 1211 MQHQQVRGGQAPGQQQ 1226


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 236 GAREQGLENEQLDYDSLIDGN-PSPSLRDQEYLQHSSLWGHQYVTRGA 376
           GA        + D D  +D N PSPSL   E+L   S  G    + GA
Sbjct: 64  GAGRFSFRKRKYDVDHEVDSNNPSPSLERAEFLNRESRSGSDSGSIGA 111


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 167 QRLQRRGVQLPRVPGQRPPSRPDGAREQGLENEQLD 274
           Q+ Q+   Q    P  RPP +P   RE  L+N+ L+
Sbjct: 578 QKQQQPLQQQQSAPETRPPQQPQQQREHYLQNQSLN 613


>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 384 PSPAPRVTY*WPHNELCCKYSWSRRLGLGFPSINE 280
           P P P      PHN+   K SW R     FPS+ E
Sbjct: 241 PPPLPEQQQLAPHNQ---KRSWRRCKACNFPSVGE 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,791,770
Number of Sequences: 59808
Number of extensions: 353981
Number of successful extensions: 962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -