BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1452X (508 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72 SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 31 0.72 SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72 SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 1.7 SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31) 29 2.2 SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1 SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7 SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7 SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9 >SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 129 Score = 30.7 bits (66), Expect = 0.72 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 182 RGVQLPRVPGQRPPSRPDGAREQGLE 259 RG LPR PG + P RP R+Q +E Sbjct: 33 RGQTLPRAPGGQNPLRPPWTRQQSVE 58 >SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019) Length = 1234 Score = 30.7 bits (66), Expect = 0.72 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Frame = +2 Query: 248 QGLENEQLDYDSLIDGNPSPSLRDQEYLQHSS-LWGHQYVTRGAGEGEQRLRPSGVVPNR 424 QG+ Q D +I SPS ++Q + H + +WG + V + R R ++ Sbjct: 988 QGIPRVQCYLDDIIITGSSPSRKEQLAVCHGTIMWGDRVVVL----PKLRRRVLDILHES 1043 Query: 425 QMVKTDAVLPAYCNPPNPCPVGYT 496 K D L AY N P+ P GY+ Sbjct: 1044 HTHKLDRFLFAYRNAPH--PTGYS 1065 >SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1175 Score = 30.7 bits (66), Expect = 0.72 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 182 RGVQLPRVPGQRPPSRPDGAREQGLE 259 RG LPR PG + P RP R+Q +E Sbjct: 590 RGQTLPRAPGGQNPLRPPWTRQQSVE 615 >SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) Length = 5087 Score = 29.5 bits (63), Expect = 1.7 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 413 VPNRQMVKTDAVLPAYCNPPNPCP 484 V R ++ A+LPAYC PP+ P Sbjct: 101 VCRRGLISEHALLPAYCTPPDTLP 124 >SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31) Length = 406 Score = 29.1 bits (62), Expect = 2.2 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Frame = +2 Query: 164 GQRLQRRGVQLPRVPGQRPPSR----------PDGAREQGLENEQLDYDSLIDGNPSPSL 313 G RL+R+G +P+ P Q+PPS G N YD+ G SP L Sbjct: 5 GNRLRRKGSIIPQSPPQQPPSTHYLTLPKLTVGGGDELSDTTNSMTTYDATTTGTLSPDL 64 Query: 314 RDQ 322 ++ Sbjct: 65 MEE 67 >SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1268 Score = 27.9 bits (59), Expect = 5.1 Identities = 19/76 (25%), Positives = 30/76 (39%) Frame = +2 Query: 167 QRLQRRGVQLPRVPGQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSL 346 Q++Q++ +Q Q P P +Q QL G P+P Q++ Sbjct: 1155 QQMQQQQLQQQMQQQQPPQQMPQNMPQQQQPATQLPSQ----GQPAPQYFQQQFQMFQQH 1210 Query: 347 WGHQYVTRGAGEGEQR 394 HQ V G G+Q+ Sbjct: 1211 MQHQQVRGGQAPGQQQ 1226 >SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2463 Score = 27.5 bits (58), Expect = 6.7 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +2 Query: 236 GAREQGLENEQLDYDSLIDGN-PSPSLRDQEYLQHSSLWGHQYVTRGA 376 GA + D D +D N PSPSL E+L S G + GA Sbjct: 64 GAGRFSFRKRKYDVDHEVDSNNPSPSLERAEFLNRESRSGSDSGSIGA 111 >SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1176 Score = 27.5 bits (58), Expect = 6.7 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 167 QRLQRRGVQLPRVPGQRPPSRPDGAREQGLENEQLD 274 Q+ Q+ Q P RPP +P RE L+N+ L+ Sbjct: 578 QKQQQPLQQQQSAPETRPPQQPQQQREHYLQNQSLN 613 >SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1449 Score = 27.1 bits (57), Expect = 8.9 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = -2 Query: 384 PSPAPRVTY*WPHNELCCKYSWSRRLGLGFPSINE 280 P P P PHN+ K SW R FPS+ E Sbjct: 241 PPPLPEQQQLAPHNQ---KRSWRRCKACNFPSVGE 272 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,791,770 Number of Sequences: 59808 Number of extensions: 353981 Number of successful extensions: 962 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 962 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1111677931 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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