Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1449
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 42 7e-04
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 36 0.026
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 33 0.24
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 33 0.24
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 31 0.97
SB_2996| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16) 30 1.7
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 30 1.7
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07) 29 3.0
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037) 29 3.9
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 29 3.9
SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68) 28 6.8
SB_23179| Best HMM Match : REV (HMM E-Value=4.8) 28 6.8
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082) 28 9.0
SB_1966| Best HMM Match : GRP (HMM E-Value=0.53) 28 9.0
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 122 EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
E LPEGW KSR G YY N T +S+W+ P
Sbjct: 80 EANLPEGWIISKSRQHGRMYYFNTETAESRWQHP 113
>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP GWE R++ S G TYY++ +T+ + W++P
Sbjct: 415 LPHGWE-RRTDSRGRTYYVDHNTRTTTWQRP 444
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 122 EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
EE LP GWE R G YY++ +++ + WE+P
Sbjct: 380 EEPLPPGWEQRVDPH-GRIYYVDHNSRTTAWERP 412
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 119 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
+E P GW R +Y N TKKSQWE P
Sbjct: 415 EESASPPGWSCHWDRKYKQYFYTNLETKKSQWEFP 449
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 83 FPAQRTNDMASTQEEILPEG---WEARKSRSTGMTYYLNKHTKKSQWEKPGG 229
F ++ ND +E + + W+A + ++ YY N+ T + QWE P G
Sbjct: 92 FQQEQDNDKEHDEEPMEEDPNYPWQACRDEASNCYYYWNQETNEVQWEMPPG 143
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 35.9 bits (79), Expect = 0.034
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 110 ASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPAS 238
++ Q LPEGWE R+ + G T+Y++ T+ + W +P ++
Sbjct: 177 SAEQPPPLPEGWEERQD-ANGRTFYIDHTTRTTTWVRPSSEST 218
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP GWE ++TG +Y + +T+ + W P
Sbjct: 489 LPHGWEKAVDQTTGRIFYRDHNTQTTHWNPP 519
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 143 WEARKSRSTGMTYYLNKHTKKSQWEKP 223
W K+ S G TYY N T++S WEKP
Sbjct: 87 WLEHKT-SDGKTYYYNARTRESAWEKP 112
>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 31.5 bits (68), Expect = 0.73
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 113 STQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
S+Q+ P+GWE +S G+ YY+N T SQ E P
Sbjct: 358 SSQQTESPDGWEQVESPQYGI-YYVNHATGSSQREHP 393
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 31.5 bits (68), Expect = 0.73
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 119 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
Q+ LP GWE ++G ++++ +T+ + W P
Sbjct: 4 QQHPLPNGWEMTVDPNSGRPFFIDHNTRTTTWTDP 38
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 31.1 bits (67), Expect = 0.97
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP GWE + G YY++ ++ ++ W P
Sbjct: 11 LPVGWEEARDTRDGRVYYIDHYSHRTTWIDP 41
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 31.1 bits (67), Expect = 0.97
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 116 TQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
+ E LP+GW +S TG YY + + +QWE+P
Sbjct: 1273 SNEYELPDGWMEVES-GTGSKYYWHVSSGTTQWERP 1307
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +1
Query: 343 REEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQCRNH 522
+EE +T +E+ L ++ +RK++ EAK ++ C + R+ K+G N
Sbjct: 1434 QEESVTEDQEQLLAQVERLQRKVVSLEAKLQK-----QQCKNTSRENTSNANKRGSFINV 1488
Query: 523 LKT 531
L T
Sbjct: 1489 LAT 1491
>SB_2996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 256 DDDEGGIPKEVRCSHLLVKHSGS---RRPSSWREEHITRTKEEALDILQEYRRKIIDREA 426
+ DE G P E + LL + RP+ + EE + + K+E D ++E + K++ R
Sbjct: 7 EGDEPGSPDEKLSTDLLNQEYDEPTPERPTKFLEEELAKRKQEKQDRMREEKLKLLQRIT 66
Query: 427 K 429
K
Sbjct: 67 K 67
>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
Length = 724
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP+GW A RS G+ YL++ T+ W +P
Sbjct: 52 LPDGWLALNHRSGGI-IYLHRPTRVCTWSRP 81
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 92 QRTNDMASTQEEILPE-GWEARKSRSTGMTYYLNKHTKKSQWEKP 223
Q+ +++ + E IL W+ K+ S G YY N TK+S W +P
Sbjct: 194 QKPDELKTPSEIILDSFPWKEHKADS-GRVYYHNTETKESIWTEP 237
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 122 EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
++ LP GWE G TYY++ KK+Q+E P
Sbjct: 327 DDELPYGWEKVDDPKYG-TYYIDHINKKTQFENP 359
>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
Length = 534
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 56 LRKRKNLLAFPAQRTNDMASTQEEILPEGWEARKSRST 169
LR++++LLA R +MAST +E L W+ + ST
Sbjct: 200 LREKEDLLAEEQYRKEEMASTTDEDLLRIWDEKPVTST 237
>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
Length = 1127
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 364 TKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDL 489
++ E LD++QE ++ + +RE + ++L +D S + DL
Sbjct: 1046 SRTEDLDLIQELKQMLAERELEMKKLLRNMNDLRSQNKRRDL 1087
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 374 SSLVRVICSSRHEDGRRLPLCFTSKWLHLTSLGI 273
S + R IC H+DG + S W H+ +GI
Sbjct: 1258 SGITRCICGYNHDDGYMICCDKCSVWQHIECMGI 1291
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 DDDEGGIPKEVRCSHLLVKHSGSRRPSSWREEHITRTKEEAL-DILQEYRRKIIDREAKF 432
DDDEGG + H S S++ S ++ H + K+E + + E R+K +A
Sbjct: 1051 DDDEGGGDDKFEPKHKKKGRSSSKKRHSRKKGHEEQQKKETIRKEINEKRKKKRQDKADA 1110
Query: 433 EELASTYSDCSSAK 474
+ T D +AK
Sbjct: 1111 SRIGLTTLDRFTAK 1124
>SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68)
Length = 629
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 367 KEEALDILQEYRRKIIDREAK-FEELASTYSDCSSAKRDGDLGRFKK 504
+ ++LD+ EYR + D ++K F E+ TY C S K L + K
Sbjct: 293 RSKSLDL--EYRYMVSDGDSKAFNEIWDTYGVCDSCKTHHSLDKSSK 337
>SB_23179| Best HMM Match : REV (HMM E-Value=4.8)
Length = 125
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 310 KHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAK-FEELASTYSD 459
K RR + +EE T+++E+ +++ E +RK++D K E+L + SD
Sbjct: 31 KRKNERRKKA-QEELQTKSREKMIEVRAENKRKMLDEMRKQTEQLEALQSD 80
>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
Length = 842
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 373 EALDI-LQEYRRKIIDREAK-FEELASTYSDCSSAKRDGDLGRFKK 504
E DI Q YR + D ++K F E+ TY C S K L + K
Sbjct: 506 EIFDIPCQTYRYMVSDADSKAFNEIWDTYGVCDSCKTHHSLDKSSK 551
>SB_1966| Best HMM Match : GRP (HMM E-Value=0.53)
Length = 178
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 256 DDDEGGIPKEVRCSHLLVKHS-GSRRPSSWR 345
DDD+G CS+ L+ HS G RP W+
Sbjct: 85 DDDDGAAIAIASCSNYLIFHSLGFLRPGVWQ 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,512,909
Number of Sequences: 59808
Number of extensions: 412181
Number of successful extensions: 1049
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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