Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1449
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI... 85 6e-17
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 42 4e-04
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 42 4e-04
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 39 0.004
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 37 0.012
At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase PPI... 37 0.016
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 33 0.26
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 31 0.79
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 31 0.79
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 31 0.79
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 31 0.79
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 31 0.79
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.79
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 31 1.0
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 2.4
At3g32190.1 68416.m04102 hypothetical protein 28 5.6
At2g26770.2 68415.m03211 plectin-related contains weak similarit... 28 5.6
At2g26770.1 68415.m03210 plectin-related contains weak similarit... 28 5.6
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 27 9.8
At1g52290.1 68414.m05900 protein kinase family protein contains ... 27 9.8
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
/ cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 119
Score = 84.6 bits (200), Expect = 6e-17
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Frame = +1
Query: 283 EVRCSHLLVKHSGSRRPSSWREEH----ITRTKEEALDILQEYRRKIIDREAKFEELAST 450
+V+ SH+L+KH GSRR +SW++ +T T+E A++ L+ R I+ +A FEE+A+
Sbjct: 6 QVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATR 65
Query: 451 YSDCSSAKRDGDLGRFKKGQ 510
SDCSSAKR GDLG F +GQ
Sbjct: 66 VSDCSSAKRGGDLGSFGRGQ 85
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3
Query: 489 GSFQERSMQKPFEDVAFSLKIGQLSQPVHTDSGIHIILRTA 611
GSF MQKPFE+ ++LK+G +S V TDSG+HII RTA
Sbjct: 79 GSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 86 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 86 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP GWE R TG +YY++ +TK + W P
Sbjct: 510 LPPGWEKRADAVTGKSYYIDHNTKTTTWSHP 540
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 119 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 232
++ LP+ W+ STG+ YY N T +Q+E+P P
Sbjct: 18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAP 55
>At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase
PPIC-type family protein similar to SP|Q9Y237
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
(EC 5.2.1.8) (Rotamase Pin4) (PPIase Pin4) (Parvulin 14)
{Homo sapiens}; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 142
Score = 36.7 bits (81), Expect = 0.016
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +1
Query: 424 AKFEELASTYSDCSSAKRDGDLGRFKKGQ 510
A+F ++A+ YS+C S K+ GDLG F +G+
Sbjct: 77 AEFAKIAAEYSECPSGKKGGDLGWFPRGK 105
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 489 GSFQERSMQKPFEDVAFSLKIGQLSQPVHTDSGIHIIL 602
G F M PF+DVAF+ +G S P + G HIIL
Sbjct: 99 GWFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHIIL 136
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 170 GMTYYLNKHTKKSQWEKP 223
G Y+ NK TKKS WEKP
Sbjct: 217 GRKYFFNKRTKKSTWEKP 234
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 137 EGWEARKSRSTGMTYYLNKHTKKSQWEKPGG 229
+ W A KS + G+ YY N T +S +EKP G
Sbjct: 157 DAWTAHKSEA-GVLYYYNSVTGQSTYEKPPG 186
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 128 ILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
ILP A S + G YY N TK S W+ P
Sbjct: 203 ILPGTDWALVSTNDGKKYYYNNKTKVSSWQIP 234
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP W+A ST YY N T ++ W +P
Sbjct: 831 LPSEWQAYWDESTKKVYYGNTSTSQTSWTRP 861
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 119 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 119 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 119 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 179 YYLNKHTKKSQWEKP 223
YY NK TK+S WEKP
Sbjct: 213 YYYNKRTKQSNWEKP 227
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPA 235
LP+ W+ TG Y+ N T +Q+E+P A
Sbjct: 17 LPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSA 51
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +1
Query: 283 EVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDC 462
+ CS L + + R + W +E +T + ++ + + + AK ++ Y +C
Sbjct: 177 QAMCSRLSQEKELTERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLVDVEKNYIEC 236
Query: 463 SSA 471
SS+
Sbjct: 237 SSS 239
>At3g32190.1 68416.m04102 hypothetical protein
Length = 358
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 352 HITRTKEEALDILQEYRRKIIDRE 423
H +RT E D++Q Y R ++DRE
Sbjct: 47 HSSRTNSELNDMIQYYERLLLDRE 70
>At2g26770.2 68415.m03211 plectin-related contains weak similarity
to Swiss-Prot:Q9JI55 plectin 1 (PLTN, PCN, 300-kDa
intermediate filament-associated protein,
IFAP300)[Cricetulus griseus]
Length = 496
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 483 GFGSFQERSMQKPFEDVAFSLKIGQLSQPVHTDSGIHI 596
G GS+ E ++K DV F++ + Q+S HT IH+
Sbjct: 368 GLGSYVEALVRK--HDVDFNVVVTQMSGEDHTSESIHL 403
>At2g26770.1 68415.m03210 plectin-related contains weak similarity
to Swiss-Prot:Q9JI55 plectin 1 (PLTN, PCN, 300-kDa
intermediate filament-associated protein,
IFAP300)[Cricetulus griseus]
Length = 496
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 483 GFGSFQERSMQKPFEDVAFSLKIGQLSQPVHTDSGIHI 596
G GS+ E ++K DV F++ + Q+S HT IH+
Sbjct: 368 GLGSYVEALVRK--HDVDFNVVVTQMSGEDHTSESIHL 403
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 368 LVRVICSSRHEDGRRLPLCFTSK-WLHLTSLGI 273
+V+ IC +R +DG R+ C + W H GI
Sbjct: 606 MVKCICRARDDDGERMISCDVCEVWQHTRCCGI 638
>At1g52290.1 68414.m05900 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 509
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = +1
Query: 253 SDDDEGGIPKEVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKF 432
+D D + + V C+ V+HS RRP + I R E + I + ++
Sbjct: 382 NDFDINEMTRMVACAAASVRHSAKRRP---KMSQIVRAFEGNISI-DDLTEGAAPGQSTI 437
Query: 433 EELASTYSDCSSAKRDGDLGRFKK 504
L + SD SS + DL +FKK
Sbjct: 438 YSLDGS-SDYSSTQYKEDLKKFKK 460
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,160
Number of Sequences: 28952
Number of extensions: 300091
Number of successful extensions: 802
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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