Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1448
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 52 5e-07
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 46 3e-05
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 45 7e-05
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 45 7e-05
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 45 7e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 43 3e-04
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 42 4e-04
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 39 0.005
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.006
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.011
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 37 0.015
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.020
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 36 0.026
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015) 36 0.034
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.046
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.56
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.56
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.98
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.98
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 30 1.7
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.7
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_23844| Best HMM Match : RRM_2 (HMM E-Value=4.8) 29 3.0
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_21920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 29 5.2
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 28 6.9
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 28 9.1
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +2
Query: 518 SFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFC 697
++P D VR RL QK K Y G +NA + + + EG ++G +PTL I P+AGI F
Sbjct: 7 TYPLDMVRARLAITQK--KKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFF 64
Query: 698 CLQT 709
+T
Sbjct: 65 TYET 68
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 270 QGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMCQSADRQF 449
Q KY+ ++ A I R+EG+ T + G++P + + Y + F T+E C+ A +F
Sbjct: 21 QKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYE----TCKKAFGEF 76
Query: 450 YTNHK 464
Y K
Sbjct: 77 YDGKK 81
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = +2
Query: 521 FPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFCC 700
+P + ++TRL A +KT + Y G L+A SV+ + EG ++GL P+L I P+AGI
Sbjct: 249 YPLEVLKTRL-AIRKTGQ-YRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGIDLAV 306
Query: 701 LQTL 712
+TL
Sbjct: 307 YETL 310
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +2
Query: 476 LLQWFNRSNRC-TVASFPFDTVRTRLIAE--QKTNKVYNGFLNALSVMIKTEGPVVLFKG 646
LL S+ C +AS+P VRTRL A+ +K + ++ L +I +G L++G
Sbjct: 330 LLACGTASSTCGQLASYPLSLVRTRLQAQAREKGGGQGDNMVSVLRKIITEDGFKGLYRG 389
Query: 647 LIPTLGQIAPHAGIQFCCLQTLLL 718
L P ++AP I + + L L
Sbjct: 390 LAPNFLKVAPAVSISYVVYENLRL 413
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +2
Query: 512 VASFPFDTVRTRLIAEQ--KTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAG 685
V +P + ++TRL + K+N Y G +AL +++ EG + L+KG+ P+ + P AG
Sbjct: 168 VTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFLGLFPFAG 227
Query: 686 IQFCCLQTL 712
F Q L
Sbjct: 228 GSFLAYQIL 236
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 264 DKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMCQSADR 443
+K + Y + AL +I+REEG+ L+ G P+ L + F ++ L + +
Sbjct: 186 NKSNAHYKGMRHALKTILREEGILALYKGVTPSFLGLFPFAGGSFLAYQILDKVDSTRTE 245
Query: 444 QFYTNHKHWINFC-NGSIAATVA 509
T ++N C G+ A T++
Sbjct: 246 PSATPICMFVNGCVAGAFAHTLS 268
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = +3
Query: 291 ILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKL 416
+++ S+ + EG+ W G+ + + Y +Q+A F ++
Sbjct: 97 LIRTFASVYKREGIKAFWKGNGVSCIRLFPYSAVQYAAFNRI 138
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 518 SFPFDTVRTRLIAEQKTNKV-YNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQF 694
++P D VR R+ E+ Y+ + V++++EG + LFKG+ P L ++AP GIQF
Sbjct: 699 TYPLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLFKGMWPNLLKVAPTIGIQF 758
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 560 QKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFCCLQ 706
Q TN Y+G L+ + + EG FKG + +I P+ +QF +
Sbjct: 585 QVTNAKYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYE 633
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 276 SKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEK 413
+KYS + L I R+EG+ + G+ + + Y +QFA +E+
Sbjct: 589 AKYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEE 634
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 279 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGI-LQFATFE 410
KYSS I+R EG L+ G P LL ++ I +QFA +E
Sbjct: 719 KYSSTWDGFKVIVRSEGFIGLFKGMWP-NLLKVAPTIGIQFAVYE 762
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 518 SFPFDTVRTRLIAEQKTNKVYNGFLNALS-VMIKTEGPVVLFKGLIPTLGQIAPHAGIQF 694
++P D VR+RL + ++ Y + + +K GP L+KG +PTL I P GI F
Sbjct: 82 TYPLDMVRSRLAFQVAQDQGYTTITQTIRCISVKEGGPKALYKGFVPTLLTIVPAMGIGF 141
Query: 695 CCLQTL 712
+T+
Sbjct: 142 YMFETM 147
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 285 SSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMCQSA 437
S +L A +I R EG+ + G+ L + YG +QF ++E + + Q++
Sbjct: 11 SEVLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKVLQTS 61
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +2
Query: 509 TVASFPFDTVRTRL-IAEQKTNKV--YNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPH 679
T ++ P D VR RL + + T + Y G ++AL + EG L+KGL+P+L IAP
Sbjct: 43 TASTHPLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLVPSLVSIAPF 102
Query: 680 AGIQ 691
G+Q
Sbjct: 103 LGVQ 106
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +2
Query: 515 ASFPFDTVRTRLIAEQ---KTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAG 685
A +P D V+TR+ ++ + KVY ++ +++ EGP+ L++GL+P L ++P
Sbjct: 930 AVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVSPEKA 989
Query: 686 IQ 691
I+
Sbjct: 990 IK 991
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +2
Query: 509 TVASFPFDTVRTRL----IAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAP 676
TVAS P D +TR+ I + K Y G ++ L+ +++ EG L+KG P +I P
Sbjct: 108 TVASMPVDIAKTRIQNMRIIDGKPE--YKGTMDVLARIVRNEGVFALWKGFTPYYFRIGP 165
Query: 677 HAGIQFCCLQTL 712
H + F L+ L
Sbjct: 166 HTVLTFIFLEQL 177
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 243 TSSRPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTD 422
TS + +Q Y+++ AL + +EEGV TLW G+IP + ++ Q AT+ +
Sbjct: 22 TSDGRLPPEQRRGYTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQ 81
Query: 423 MCQS 434
+ S
Sbjct: 82 LLLS 85
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 279 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKL 416
+Y + L I+R EGV LW G P + +L F E+L
Sbjct: 132 EYKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPHTVLTFIFLEQL 177
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 545 RLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPT 658
RL EQ+ Y NAL M K EG + L++G IPT
Sbjct: 26 RLPPEQRRG--YTNVFNALYRMSKEEGVLTLWRGYIPT 61
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +2
Query: 512 VASFPFDTVRTRLIAEQ--KTNKVYNGFLNALSVMIKTEGPVVLFKGLIPT 658
V +P + ++TRL + K+N Y G +AL +++ EG + L+KG+ P+
Sbjct: 437 VTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPS 487
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 264 DKQGSKYSSILQALGSIIREEGVATLWSGHIPAQL 368
+K + Y + AL +I+REEG+ L+ G P+ L
Sbjct: 455 NKSNAHYKGMRHALKTILREEGILALYKGVTPSFL 489
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 518 SFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVV-LFKGLIPTLGQIAPHAGIQF 694
++P D VR+RL + Y G + + TEG +V L++G PT + P GI F
Sbjct: 16 TYPLDIVRSRLAFQVADEHTYCGICQTVKQIFMTEGGMVALYRGFTPTSLSMIPAVGIGF 75
Query: 695 CCLQT 709
++
Sbjct: 76 YAFES 80
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 500 NRCTVASFPFDTVRTRLIAEQ-KTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAP 676
+ V P +T++ + I +Q + N Y GF + + ++KTEG ++KGL T+ +
Sbjct: 149 SEAVVVVCPMETIKVKFIHDQTQPNPKYKGFFSGVRTILKTEGFFGVYKGLTATVIKQGS 208
Query: 677 HAGIQF 694
+ I+F
Sbjct: 209 NQMIRF 214
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 518 SFPFDTVRTRLIAEQKTNK-VYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQF 694
+FP + V+T+L ++K K +Y G ++ + +K G + L++GL L P A ++F
Sbjct: 58 TFPTEYVKTQLQLDEKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASVRF 117
Query: 695 CCLQTL 712
+ L
Sbjct: 118 AVFEYL 123
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 515 ASFPFDTVRTRLIAEQKTNKV-YNGFLNALSVMIKTEGPVVLFKGLIPTL 661
++FPFD +++R+ A+ K Y G ++ K EG +V +G+ PTL
Sbjct: 149 STFPFDVIKSRIQADGNLGKFRYKGMMDCALQSYKEEGMIVFTRGIWPTL 198
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 509 TVASFPFDTVRTRL--IAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHA 682
+VA P D ++TRL + + YNG ++ + EG +KG +P + IAP
Sbjct: 220 SVAVNPLDVIKTRLQLLNRPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMIVIAPLF 279
Query: 683 GI 688
GI
Sbjct: 280 GI 281
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 509 TVASFPFDTVRTRLIAEQKTNK----VYNGFLNALSVMIKTEGPVVLFKGLIP 655
T + P D VRTR + + K K VY G L+ + ++ EG + L+KG P
Sbjct: 226 TCVASPVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYKGFFP 278
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +2
Query: 521 FPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLI 652
+P + ++ RL ++KT +YNG L+A + +I+TEG L+KG +
Sbjct: 34 YPANLIKIRLQVQRKTT-LYNGSLDAFTKVIRTEGVRGLYKGYL 76
>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
Length = 1238
Score = 35.9 bits (79), Expect = 0.034
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 195 YSSFSPASRCSEDKISTSSRPITDKQGSKYSSILQALGSIIREEGVATLWS 347
+S+ +PAS ED S+SS P K+GS + SI A + R + +W+
Sbjct: 128 HSNLTPASNGEEDNRSSSSHPKPKKRGSDFDSITYAEAAASRAQTPEGMWA 178
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 35.5 bits (78), Expect = 0.046
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +3
Query: 222 CSEDKISTSSRPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFA 401
C + + + RP ++S + AL I R EG+++LW G P ++++ ++ F
Sbjct: 40 CLCNALGSPYRPYPHPPHPPFTSSIDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFT 99
Query: 402 TFEKL 416
+++L
Sbjct: 100 LYDQL 104
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 512 VASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKG 646
+AS+P DT+R R++ Y G ++ ++K EG + L KG
Sbjct: 227 LASYPIDTIRRRMMMTSGEAVKYKGSIDCTIQILKKEGAMSLMKG 271
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 521 FPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIP-TLGQIAPHAGI 688
FP D ++TR + + G + L ++ EGP+ L+KG +P + + H G+
Sbjct: 238 FPVDMLKTR-VQIAPMGRYPRGARDVLKEVLCNEGPMALYKGYVPGMIRAVVTHCGL 293
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +2
Query: 512 VASFPFDTVRTRLIAEQKTNK----VYNGFLNALSVMIKTEGPVVLFKGL-IPTLGQIAP 676
+ FP DT++ RL A +Y + +I+ EG LF+G+ +P L I P
Sbjct: 54 LVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSI-P 112
Query: 677 HAGIQFCCL 703
+ + F C+
Sbjct: 113 NTTVLFSCV 121
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 279 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFE 410
KY S Q LG+++REEG L+ G + + + F T+E
Sbjct: 971 KYRSFFQTLGTVLREEGWRGLYGGLGTHVIRQVPNTAIMFFTYE 1014
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 578 YNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFCCLQTL 712
++G + M+K EG LFKGL TL + P I F L
Sbjct: 774 FSGIVPYARYMVKNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKL 818
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 578 YNGFLNALSVMIKTEGPVVLFKGLIP 655
Y G L + + KTEG ++KGLIP
Sbjct: 66 YRGMLGTMVTLFKTEGMKTMYKGLIP 91
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 515 ASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQF 694
A P DT++ RL A G L+ L+ +KTEG L+KG++ + AP + F
Sbjct: 86 AGQPLDTIKVRLQASFGA-----GPLDMLARTVKTEGVRGLYKGMLAPVLVAAPVTAVSF 140
Query: 695 CCL 703
L
Sbjct: 141 YSL 143
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +2
Query: 476 LLQWFNRSNRCTVA-SF---PFDTVRTRLIAEQK--TNKVYNGFLNALSVMIKTEGPVVL 637
++Q++N C V SF P + V+ L +++ T Y G + L + +T G +
Sbjct: 160 MVQYYNAGVFCGVCVSFIYAPTERVKCLLQVQKESGTKARYQGLGDCLLQVYRTGGLRGV 219
Query: 638 FKGLIPTLGQ 667
FKGL PT+G+
Sbjct: 220 FKGLGPTMGR 229
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 557 EQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTL 661
+ +TN VYNG + +IK E + L+KG+ L
Sbjct: 184 QTQTNNVYNGVFDCFKQIIKRESVLGLYKGMASPL 218
>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 614 KTEGPVVLFKGLIPTLGQIAPHAGIQFCCLQTL 712
+TEG LFKGL P L + P I F Q L
Sbjct: 798 RTEGARSLFKGLCPNLLAVTPSRAIYFTTYQKL 830
>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = -3
Query: 627 GPSVFIITDNALRNPL*TLFVFCSAINLVRTVSNGNEATVQRLLRLNHCKS*SSAYDSCK 448
GP +F+I N L L+ + L V+ G E+TVQ L CK A D +
Sbjct: 1086 GPWLFLIMINDLDAQGVDLWKYVDDTTLAEVVNKGEESTVQHSLDELSCK---VATDRFQ 1142
Query: 447 IGDRHSDTYQLVFRKSQIE 391
+ + ++ F +S+I+
Sbjct: 1143 LNEAKCKELRISFSRSEID 1161
>SB_23844| Best HMM Match : RRM_2 (HMM E-Value=4.8)
Length = 190
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 234 KISTSSRPITDKQGSKYSSILQALGSIIREEGVATLWS---GHIP-AQLLSISYGILQFA 401
K++T+ R + K + +ALG ++R TL S G+I + LSI+ G+LQ
Sbjct: 93 KVNTTVRKLGIKGNNMTPEAGRALGEMLRHNTTITLLSLFHGNIGNSGALSIASGLLQNT 152
Query: 402 TFEKL 416
T EK+
Sbjct: 153 TLEKI 157
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Frame = +2
Query: 524 PFDTVRTRLI------AEQKTNKV--YNGFLNALSVMIKTEGPVVLFKGLIPT 658
PFD ++ R+ A Q +V Y+G + ++K EG + LFKGL P+
Sbjct: 49 PFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKGLAPS 101
>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 377 ILRDPSICDFRKTN*YVSECRSPILHES*ALDQLLQ-WFNRSNRCTVASFPFDTVRTRLI 553
ILR+P+IC+ TN EC+ + ++ ++ L+ N T S +T+ +R++
Sbjct: 1306 ILRNPNICNGNTTN-LALECKVSVDEKNPRVNGLVNATMNSKPEKTSNSVLTNTLNSRIL 1364
Query: 554 AEQK-TNKVYNGF 589
+K NK Y F
Sbjct: 1365 QTRKRKNKAYRNF 1377
>SB_21920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 195 YSSFSPASRCSEDKISTSSRPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLS 374
++S+ + D+ S R + + + S L A G ++ ATL S +PA LL
Sbjct: 5 FASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSVTATLASADVPAVLLP 64
Query: 375 I 377
+
Sbjct: 65 L 65
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +2
Query: 518 SFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFC 697
S P D ++TR++ Y G + + + EG + L+KG +PT ++
Sbjct: 318 STPADVIKTRIMNNPSG---YQGAVECFMLAVHREGLLSLYKGWLPTWTRMLGKLPCWRT 374
Query: 698 CLQTLLLNT 724
C + LL T
Sbjct: 375 CERNELLKT 383
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 186 RCGYSSFSPASRCSEDKISTSSRPITDKQGSKYSSILQALGSIIRE 323
R G S+ + A+ + D T P TD+ G+ S++ +A G ++RE
Sbjct: 1070 RTGASNGASAATGANDLTGT---PTTDRMGNSTSALARAFGIVVRE 1112
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 222 CSEDKISTSSRPITDKQGSKYSSILQALGSIIREEG 329
CS ++ S ITDK G +S++ +G + R+EG
Sbjct: 1285 CSTNEGLFSGTKITDKFGVLDASVVNTVGELARQEG 1320
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 217 LDVLKIRFQLQVDLSQINKVQNTVQ 291
LDV K+ +LQVD + +KV+N VQ
Sbjct: 1158 LDVEKLMEKLQVDQEEADKVRNVVQ 1182
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 524 PFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFCCL 703
P + V+ L+ Q N + G L L + K EG + FKG + +I P++ +QF
Sbjct: 54 PLERVKI-LLQIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIFPYSAVQFAAY 112
Query: 704 Q 706
+
Sbjct: 113 E 113
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 584 GFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQF 694
G ++ L+ T G LF+G T+ ++ P+A IQF
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQF 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,589,702
Number of Sequences: 59808
Number of extensions: 445883
Number of successful extensions: 970
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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