Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1447
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.052
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   3.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.5  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 697 VTYTIYL*LSLCMLFVFLSLSIRTTNNMIICCTVIMFNV 581
           + +T++L   LC+   F +  I T + ++ CC  I FN+
Sbjct: 154 IIFTVHLLFLLCIYHFFCAFIIFTMH-LLFCCAFIFFNM 191


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 285 QRAARSLDAGSPVTRCPKSSFRMASCG 365
           +R  R+LDA  P      S F    CG
Sbjct: 554 ERTFRNLDANRPTGGDALSEFNFCGCG 580


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 232 KMYWRCGAMSLKARHK-SSSYMISALI-SLDMILSNIVGPIVVV 107
           + Y  CG M L A    S  Y+IS +  S+ M LS  +GP +V+
Sbjct: 525 RFYIACGIMILVANVAISFGYLISCVSRSVSMALS--IGPPLVI 566


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 232 KMYWRCGAMSLKARHK-SSSYMISALI-SLDMILSNIVGPIVVV 107
           + Y  CG M L A    S  Y+IS +  S+ M LS  +GP +V+
Sbjct: 525 RFYIACGIMILVANVAISFGYLISCVSRSVSMALS--IGPPLVI 566


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 420 GWKTDGLATWVS-YINCCKLWLKKMHKI 500
           GW TDG   W S YI   K++  K  KI
Sbjct: 480 GWVTDG-NNWCSPYIGWQKVYENKPAKI 506


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,346
Number of Sequences: 336
Number of extensions: 4058
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)