Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1445
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 38 0.009
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 37 0.015
At3g10650.1 68416.m01281 expressed protein 34 0.11
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 31 0.56
At2g45910.1 68415.m05709 protein kinase family protein / U-box d... 31 0.98
At2g40070.1 68415.m04923 expressed protein 30 1.3
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 29 2.3
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 29 3.0
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 29 3.0
At2g24310.1 68415.m02906 expressed protein 29 4.0
At5g09960.1 68418.m01151 expressed protein similar to unknown pr... 28 5.2
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 28 5.2
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa... 28 5.2
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 28 6.9
At4g22240.1 68417.m03218 plastid-lipid associated protein PAP, p... 28 6.9
At1g21810.1 68414.m02729 expressed protein 28 6.9
At5g16940.1 68418.m01985 expressed protein contains Pfam profile... 27 9.2
At4g27595.1 68417.m03964 protein transport protein-related low s... 27 9.2
At3g12930.1 68416.m01611 expressed protein contains Pfam domain ... 27 9.2
At1g24560.1 68414.m03090 expressed protein 27 9.2
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 37.5 bits (83), Expect = 0.009
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFG--VSSAPSTQATALSFGVSSATTQPPSTGIN 177
SS+ S+ TS L F + + + +TG FG VSS P++ T SFG +++T PS G
Sbjct: 25 SSSASSTTSPLSFSFNQSSNPSSTGFGFGSSVSSTPASSTTP-SFGFGASST--PSFG-- 79
Query: 178 FGTGTS 195
FG+ S
Sbjct: 80 FGSSAS 85
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Frame = +1
Query: 4 SSTPSTQTSGLGFG----VSSAPSTQAT-GLSFGVSSAP------STQATALSFGV-SSA 147
S S+ S GFG VSS P++ T FG SS P S ++ SFG SSA
Sbjct: 38 SFNQSSNPSSTGFGFGSSVSSTPASSTTPSFGFGASSTPSFGFGSSASSSTPSFGFGSSA 97
Query: 148 TTQPPSTGINFGTGTS 195
+ P ST +FG GT+
Sbjct: 98 SVTPASTTPSFGFGTA 113
Score = 35.1 bits (77), Expect = 0.046
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 7 STPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALS-FGVSSATTQPPSTGIN-F 180
S+ S+ T GFG S++ + +T SFG +A S+ A A S FG S+ + G + F
Sbjct: 82 SSASSSTPSFGFGSSASVTPASTTPSFGFGTAASSSAPAPSLFGSSTTNASSAAPGSSPF 141
Query: 181 GTGTS 195
G TS
Sbjct: 142 GFVTS 146
Score = 34.7 bits (76), Expect = 0.060
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 16 STQTSGLGFGVSSAPSTQATG-----LSFGVSSAPSTQATALSFGVSSATTQPPSTGINF 180
S G FG SSA ++ + LSF + + + +T FG S ++T ST +F
Sbjct: 9 SNSVGGFSFGSSSATNSSSASSTTSPLSFSFNQSSNPSSTGFGFGSSVSSTPASSTTPSF 68
Query: 181 GTGTS 195
G G S
Sbjct: 69 GFGAS 73
Score = 34.3 bits (75), Expect = 0.080
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +1
Query: 4 SSTPS-----TQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQP-PS 165
S+TPS + T GFG S++ ST + G S P++ + FG +++++ P PS
Sbjct: 63 STTPSFGFGASSTPSFGFGSSASSSTPSFGFGSSASVTPASTTPSFGFGTAASSSAPAPS 122
Query: 166 TGINFGTGTS 195
FG+ T+
Sbjct: 123 L---FGSSTT 129
Score = 34.3 bits (75), Expect = 0.080
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 375 ITFAQLEENINKWTLELEEQERTFINQATQINAWDTLLIAN 497
IT +EE I +W EL+E+ F QA I WD ++ N
Sbjct: 538 ITGKTVEEIIKEWNTELQERTGRFRKQANAIAEWDKRILQN 578
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGV---SSAPSTQATGLSFGVSSAPSTQATALSFGVSSA-TTQPPSTG 171
S TP++ T GFG SSAP+ G S +S+ + ++ F SSA +T PS+
Sbjct: 98 SVTPASTTPSFGFGTAASSSAPAPSLFGSSTTNASSAAPGSSPFGFVTSSASSTATPSSS 157
Query: 172 INFGTGTS 195
+ FG S
Sbjct: 158 L-FGAPAS 164
Score = 31.1 bits (67), Expect = 0.74
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 28 SGLGFGVSSAPSTQATGLSFGVSSAPSTQATA-LSFGVSSATTQPPSTGINFGTGTS 195
SG FG S++ + G S +S+ ++ T+ LSF + ++ P STG FG+ S
Sbjct: 2 SGFPFGQSNSVGGFSFGSSSATNSSSASSTTSPLSFSFNQSSN-PSSTGFGFGSSVS 57
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 500 REDVELNEAVETVKNEQQSLEHELDFVLAQQKELEDLLGPMEKQLLQENNDRIK 661
R ++E+ + VET Q SLE +L+ + Q+E++ L ME++ + ND K
Sbjct: 584 RLEIEVAKVVET----QSSLERQLELIETHQQEVDKALQSMEEEAERIYNDERK 633
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 16 STQTSGLGFGVSSAPSTQATGLS--FGVSSAPSTQATALSFGVSSATTQPPSTGI 174
ST G + SAPS+ + S FG SS+ +T + L SSAT PS +
Sbjct: 182 STPLFGSSPSLFSAPSSASASNSSLFGASSSAATSTSPLFGAPSSATGATPSFSV 236
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFG 183
S++P + ++G F S+A ST + S S+ P T +++ SF ++ ++G N
Sbjct: 325 SASPFSASTGFSFLKSTASSTTS---STTPSAPPQTASSSSSFSFGTSA----NSGFNLS 377
Query: 184 TGTS 195
TG+S
Sbjct: 378 TGSS 381
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 36.7 bits (81), Expect = 0.015
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 7 STPST-QTSGLGFGVSSAPSTQATGL-SFGVSSAPSTQATALSFGVSSATTQPPSTGINF 180
STPS TS FG SS P+ AT +FG S++PS AT +S T STG F
Sbjct: 158 STPSFGATSTPSFGASSTPAFGATNTPAFGASNSPSFGATNTPAFGASPTPAFGSTGTTF 217
Query: 181 G 183
G
Sbjct: 218 G 218
Score = 35.1 bits (77), Expect = 0.046
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGL-SFGVSSAPSTQAT-ALSFGVSSA 147
SSTP T+ FG S PS AT SFG SS P+ AT +FG S++
Sbjct: 142 SSTPFGATNTPAFGAPSTPSFGATSTPSFGASSTPAFGATNTPAFGASNS 191
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFG 183
SS+P+ S FG S A S FG + + FG S+ +QP +FG
Sbjct: 82 SSSPAFGNSTPAFGASPASSPFGGSSGFGQKPLGFSTPQSNPFGNSTQQSQPAFGNTSFG 141
Query: 184 TGT 192
+ T
Sbjct: 142 SST 144
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 33.9 bits (74), Expect = 0.11
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVS-SAP-STQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGIN 177
+S+ ST +S L FG S AP S+ +G F S S+ T SFG SSA T +T
Sbjct: 1078 ASSSSTMSSPL-FGTSWQAPNSSPNSGPVFSSSFTTSSTPTTFSFGGSSAATVSSTTTPI 1136
Query: 178 FGTGTS 195
FG T+
Sbjct: 1137 FGASTN 1142
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 16 STQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALS-FGVSSATTQPPSTGINFGT 186
S+ SG F S S+ T SFG SSA + +T FG S+ T PS FG+
Sbjct: 1098 SSPNSGPVFSSSFTTSSTPTTFSFGGSSAATVSSTTTPIFGASTNNTPSPSPIFGFGS 1155
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 25 TSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSS---ATTQPPST 168
TS FG A + Q+TG+ FG SA + FG SS +T PST
Sbjct: 864 TSTFKFG-GMASADQSTGIVFGAKSAENKSRPGFVFGSSSVVGGSTLNPST 913
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 16 STQTSGLGFGVSSAPSTQATGLSFGVSSAPS-TQATALSFGVSSATTQPPSTGINFGTGT 192
S T+ LG G S TG+ FG + S + +T FG S ++ STG G GT
Sbjct: 32 SATTTTLGSGSGS------TGIGFGAGTGSSGSGSTGFGFGAGSGSSGSGSTGSGLGAGT 85
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPST-QATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINF 180
SS + SGLG G S PS+ GL SS P + A G S T +TG
Sbjct: 71 SSGSGSTGSGLGAGTGSIPSSGSGPGLLPTASSVPGSLAGG---GSGSLPTTGSATGAGA 127
Query: 181 GTGTS 195
GTG++
Sbjct: 128 GTGSA 132
>At2g45910.1 68415.m05709 protein kinase family protein / U-box
domain-containing protein contains Pfam profiles PF00069
Eukaryotic protein kinase domain, PF04564: U-box
domain; supported by tandem duplication of (GI:3386604)
(TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
Length = 834
Score = 30.7 bits (66), Expect = 0.98
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = +2
Query: 494 ERREDVELNEAVE-----TVKNEQQSLEHELDFVLAQQKELEDLL----GPMEK 628
+RR+D E+ A E T+KNEQ+ + EL +AQ+ LE + G MEK
Sbjct: 362 KRRKDTEIAVAKEKERFITIKNEQEVIMEELQSAMAQKAMLESQIAKSDGTMEK 415
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 4 SSTPSTQTS-GLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGIN 177
+S P+T T+ G S PST S+ P +++TA S +S T PPS I+
Sbjct: 253 ASKPTTSTARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRPTLPPSKTIS 311
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 VELNEAVETVKNEQQSLEHELDFVLAQQKELEDLLGPMEKQ-LLQENNDRIKDPERGPMY 685
+ +NEA+E E L H D + K+LE L P E+Q LLQE + DP P +
Sbjct: 522 MRINEALEA---EILKLNHLRD----RAKKLELLKSPEERQRLLQEVPEVHTDPSMDPSH 574
Query: 686 SLAEN 700
+L+E+
Sbjct: 575 ALSED 579
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +2
Query: 482 ITNSERRED---VELNEAVETVKNEQQSLEHELDFVLAQQKELEDLLGPMEK 628
I N +R E+ LN+ ++ +K E ++L+ D ++ Q ++ E+L +EK
Sbjct: 712 IDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEK 763
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 SSTPST-QTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINF 180
SSTP +S FG S AP+ ++G +FG +T ++ +FG SS T S F
Sbjct: 215 SSTPLFGSSSSPAFGASPAPAFGSSGNAFG----NNTFSSGGAFGSSSTPTFGASNTSAF 270
Query: 181 GTGTS 195
G +S
Sbjct: 271 GASSS 275
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSS--APSTQATALSFGVSSATTQPP---ST 168
SSTPS +S FG +S ++ GLS SS +TQ + +FG S+ + P ST
Sbjct: 93 SSTPSFGSSNSPFGGTSTFGQKSFGLSTPQSSPFGSTTQQSQPAFGNSTFGSSTPFGAST 152
Query: 169 GINFGTGTS 195
FG ++
Sbjct: 153 TPAFGASST 161
>At2g24310.1 68415.m02906 expressed protein
Length = 322
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 1 VSSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPP 162
VSS+PS + S+ S+ +T + VS++PS A ++S+++ P
Sbjct: 121 VSSSPSLPAENVRVSESNLKSSSSTAKTTPVSASPSVNARVSESNLNSSSSTTP 174
>At5g09960.1 68418.m01151 expressed protein similar to unknown
protein (emb|CAB61744.1)
Length = 112
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 702 KFSASEYIGPLSGSLIRSLFSCSNC 628
+FS S + P S S RS+FSC NC
Sbjct: 84 EFSPSHHHQPHSPSTRRSMFSCFNC 108
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 497 RREDVELNEAVETVKNEQQSLEHELDFVLAQQKELE 604
++E + L + +E KNE L+ E+ +L+++ E+E
Sbjct: 235 KKEKIGLEKIMEEKKNEIDGLKREIKVLLSEKNEME 270
>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 508
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +1
Query: 1 VSSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINF 180
VSS P ++ VS+ P ++ S GVSS P +Q GVSS P IN
Sbjct: 168 VSSQPESEPVNHRV-VSTQPESEPVNHS-GVSSQPESQPVVNHRGVSSQPESQPVNHIND 225
Query: 181 G 183
G
Sbjct: 226 G 226
>At5g07660.1 68418.m00877 structural maintenance of chromosomes
(SMC) family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 512 ELNEAVETVKNEQQSLEHELDFVLAQQKELE-DLLGPMEKQLLQENNDRIKDPERGP 679
E+NE +E +KN + +E VL +K+L + +++QL ++N +K ER P
Sbjct: 223 EINELLEKIKN-MEHVEEITQQVLHLKKKLAWSWVYDVDRQLKEQNEKIVKFKERVP 278
>At4g22240.1 68417.m03218 plastid-lipid associated protein PAP,
putative similar to plastid-lipid associated proteins
PAP2 [Brassica rapa] GI:14248550 GI:14248556; contains
Pfam profile PF04755: PAP_fibrillin
Length = 310
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 647 CSLAVTVSP-SVLIDLPILFVVPVQSLIHVPVIA 549
C V++SP S I P F+VPV S+IH P+I+
Sbjct: 12 CQTRVSISPNSKSISKPP-FLVPVTSIIHRPMIS 44
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 503 EDVELNEAVETVKNEQQSLEHELDFVLAQQKELEDLLGPM--EKQLLQENNDRIKD 664
E +L V+ + ++ L E++ V+ + ELED+L + EK L+ + D +KD
Sbjct: 282 EKDDLEREVKCCREAEKRLSLEIEAVVGDKMELEDMLKRVEAEKAELKTSFDVLKD 337
>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
PF04828: Protein of unknown function (DUF636)
Length = 135
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 460 VAWLMNVRSCSSNSKVHLLIFSSN 389
+AW N CS VH ++ SSN
Sbjct: 28 IAWSCNCSDCSMRGNVHFIVPSSN 51
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 512 ELNEAVETVKNEQQSLEHELDFVLAQQK-ELEDLLGPMEKQLLQENNDRIKDPE 670
EL+ V +++Q +E D V+++ K E+E L G +EK + EN +KD E
Sbjct: 237 ELSRLKALVGSDEQKKSNEDDEVVSKLKSEIEMLRGKLEKVSILENT--LKDQE 288
>At3g12930.1 68416.m01611 expressed protein contains Pfam domain
PF02410: Domain of unknown function DUF143
Length = 238
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 672 LSGSLIRSLFSCSNCFSIGPNRSSNSFCCASTKSNSCSSDCC 547
++G+L+ F S+ P ++S+S C S + S +CC
Sbjct: 9 VAGALLAGDFRLPAVSSLIPRKTSSSLSCLSNRDLSSPYNCC 50
>At1g24560.1 68414.m03090 expressed protein
Length = 678
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +2
Query: 473 LGHITNSERREDVELNEAVETVKNEQQSLEHELDFVLAQQKELEDLLGPMEKQLLQENND 652
L +I + + E VEL +E + E SL +LD Q KEL + +E+ L+E
Sbjct: 464 LENIVKASQLEIVELQHLLEASREETSSLRKQLD---TQTKELNQRMRQIEE--LKEKER 518
Query: 653 RIKDPERGPMYSLA 694
+ G M +A
Sbjct: 519 IANENVEGLMTDIA 532
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,087
Number of Sequences: 28952
Number of extensions: 267509
Number of successful extensions: 1068
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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