Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1444
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    23   2.4  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   5.5  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   9.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.7  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 275 SYDYLKTLASDVHVVRGDFDE 337
           S +  +TL SD+++++ +FDE
Sbjct: 22  SEETCETLMSDINLIKEEFDE 42


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 509 NTRISSISILVQLLEVTALYTGILLLRLC*WTFRVRQWSPTFTSSSVMKSK 661
           N  +S I ++V+ L   +LY     + +   T +  +WS  F     ++SK
Sbjct: 58  NAHLSGIQLVVRNLLDISLYLNAYHVFVTMMTLKRHKWSTLFEILLKLESK 108


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 485 ALISGCPHPAA 453
           A  SG PHPAA
Sbjct: 39  AAASGAPHPAA 49


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 485 ALISGCPHPAA 453
           A  SG PHPAA
Sbjct: 39  AAASGAPHPAA 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,294
Number of Sequences: 336
Number of extensions: 4052
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)