Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1444
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_24603| Best HMM Match : GatB_Yqey (HMM E-Value=0.7) 29 4.8
SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 29 4.8
SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_24707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_25765| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 28 8.4
SB_38524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_40912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1346
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 436 RLFIAPRDYLVSMNQSNAELSNCDDFLL 353
RLF A +YL N +N +NCDDFLL
Sbjct: 385 RLFKAA-NYLTYNNVTNVTRANCDDFLL 411
>SB_24603| Best HMM Match : GatB_Yqey (HMM E-Value=0.7)
Length = 984
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -1
Query: 495 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 403
RC+C D R S+C C A SS +G WC
Sbjct: 669 RCLCEDCRKPYSTCDCGSAAPSSRLHDIKGRIWC 702
>SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -1
Query: 495 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 403
RC+C D R S+C C A SS +G WC
Sbjct: 554 RCLCEDCRKPYSTCDCGSAAPSSRLHDIKGRIWC 587
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +1
Query: 358 ESRHSWTVPHWTDSWTPSSPLGR*RVSSFDTEAAGCGHPDIRAHAS------L*GLQHEN 519
E++HS T+PH S + S+ + ++ D A+ G P + H S L GL +
Sbjct: 453 EAKHS-TMPHHYASQSVSTQMSTSAIAWEDNRASNSGSPGLLPHTSATSKEQLPGLSGTH 511
Query: 520 KFYINPGSATGGYSPLYRDPTPS 588
I+ +++ Y L P+P+
Sbjct: 512 MPQISVQASSSPYGSLSSQPSPT 534
>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 428 EESLALIQRQLDVDILISGHTH 493
+ +L IQ+ D+D+++SGHTH
Sbjct: 244 QAALQAIQQYPDIDLVLSGHTH 265
>SB_24707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 921
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -1
Query: 495 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 403
RC+C D R S+C C A SS +G WC
Sbjct: 732 RCLCEDCRKPYSTCDCGSAAPSSRLHDIKGRIWC 765
>SB_25765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = -1
Query: 495 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 403
RC+C D R S+C C A SS G WC
Sbjct: 129 RCLCEDCRKPYSTCDCGSAAPSSRLHDINGQIWC 162
>SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -1
Query: 495 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 403
RC+C D S+C C A SS +G TWC
Sbjct: 1091 RCLCEDCGKPYSTCDCGSAAPSSRLHDIKGRTWC 1124
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 449 QRQLDVDILISGHTHRFEAYNTRISSISILVQLLEVTALYTGILLLRLC*WTF 607
Q + D +I + RF YN S S+ + + + ++ ++ + C WT+
Sbjct: 288 QINCNTDHIIHENYSRFTCYNVLSSYFSVTLCIYYILLVFCAVIFVYNCAWTY 340
>SB_38524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 413 VPWGDEESLALIQRQLDVDILISGHTHR-FEAYNTRISSISIL 538
VP G ++ +++ D ++ H +R +E Y+TR+ +I +L
Sbjct: 356 VPGGSTLTIRVLRHTTIADTSVTTHDYRRYECYDTRLETIRVL 398
>SB_40912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 534 IDIELILVL*ASKRCVCPDIRMSTSSCLCIKARDSSSPQGTTWCP*IS 391
+++ ++ K+ C M SC+ I S++P G WC +S
Sbjct: 52 LNVPALITSLVKKKTACHLKCMKEKSCVSINFASSANPTGEFWCELLS 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,169,308
Number of Sequences: 59808
Number of extensions: 491274
Number of successful extensions: 1535
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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